| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,493,395 – 7,493,451 |
| Length | 56 |
| Max. P | 0.725274 |
| Location | 7,493,395 – 7,493,451 |
|---|---|
| Length | 56 |
| Sequences | 5 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 99.29 |
| Shannon entropy | 0.01289 |
| G+C content | 0.42500 |
| Mean single sequence MFE | -12.06 |
| Consensus MFE | -12.22 |
| Energy contribution | -12.06 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.02 |
| Structure conservation index | 1.01 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.725274 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7493395 56 + 22422827 AAAUAAAGAUCUCGAGUCGAGUACAAUUGACUGGCGAGUGGCACUUAAGAGUGAUG ..........((((((((((......))))))..))))...((((....))))... ( -12.00, z-score = -0.94, R) >droYak2.chrX 7937298 56 - 21770863 AAAUAAAGAUCUCGAGUCGAGUACAAUUGACUGGCGAGUGGCACUUAAGAGUGAUG ..........((((((((((......))))))..))))...((((....))))... ( -12.00, z-score = -0.94, R) >droEre2.scaffold_4690 16408387 56 + 18748788 AAAUAAAGAUCUCGAGUCGAGUACAAUUGACUGGCGAGUGGCACUUAAGAGUGAUG ..........((((((((((......))))))..))))...((((....))))... ( -12.00, z-score = -0.94, R) >droSec1.super_24 701136 56 + 912625 AAAUAAAGAUCUCGAGUCAAGUACAAUUGACUGGCGAGUGGCACUUAAGAGUGAUG ..........((((((((((......))))))..))))...((((....))))... ( -12.30, z-score = -1.31, R) >droSim1.chrX 6013952 56 + 17042790 AAAUAAAGAUCUCGAGUCGAGUACAAUUGACUGGCGAGUGGCACUUAAGAGUGAUG ..........((((((((((......))))))..))))...((((....))))... ( -12.00, z-score = -0.94, R) >consensus AAAUAAAGAUCUCGAGUCGAGUACAAUUGACUGGCGAGUGGCACUUAAGAGUGAUG ..........((((((((((......))))))..))))...((((....))))... (-12.22 = -12.06 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:23:52 2011