Locus 13571

Sequence ID dm3.chrX
Location 7,482,071 – 7,482,163
Length 92
Max. P 0.989485
window18682 window18683

overview

Window 2

Location 7,482,071 – 7,482,163
Length 92
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 72.77
Shannon entropy 0.42683
G+C content 0.50441
Mean single sequence MFE -22.19
Consensus MFE -16.48
Energy contribution -17.80
Covariance contribution 1.32
Combinations/Pair 1.11
Mean z-score -2.13
Structure conservation index 0.74
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.37
SVM RNA-class probability 0.989485
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 7482071 92 + 22422827
----------------AUAGGCCUUCUCUGUGGUUUCCCAUCGCAAAUUAUAAGCCACGAUGGGAACCCAGCCGAUCCAUCCAGUCCCAGCCAAUUCAAUCGCAGUAC------------
----------------...(((.....((((((.(((((((((..............))))))))).)))...((....))))).....)))................------------ ( -22.44, z-score =  -2.06, R)
>droPer1.super_14 927667 81 + 2168203
-----------------CCGGUGCUUCCCC---UUUCCCAUUGCAAAUUGUUAACCGCGAUGGGAACCCAGACUA-------AAUCCAAUCCAAUCCAUUCCCGAUCC------------
-----------------.(((.........---.((((((((((............))))))))))....((...-------..))...............)))....------------ ( -15.50, z-score =  -1.37, R)
>droEre2.scaffold_4690 16396917 91 + 18748788
----------------AUAGGC-UUCUCUGUGGUUUCCCAUCGCAAAUUAUAAGCCGCGAUGGGAACCCAGCCGAUCCAGCCAGUCCCAGCCAAUUCAAUCGCAGUAC------------
----------------...(((-(...((((((.((((((((((............)))))))))).)))((.......)))))....))))................------------ ( -28.90, z-score =  -3.62, R)
>droYak2.chrX 7924408 120 - 21770863
AUACAGAUACAGAUACAUAGGUUUUCACUGUGGUUUCCCAUCGCAAAUUAUAAGCCACGCUGGGAACCCAGCCGAUCCAUCCAGUCCCAGCCAAUUCAAUCUCACUACCAAACCACCAAC
...................(((((.....(((((((...............)))))))(((((((...................)))))))..................)))))...... ( -21.67, z-score =  -1.55, R)
>droSec1.super_24 689897 92 + 912625
----------------AUAGGCCUUCUCUGUGGUUUCCCAUCGCAAAUUAUAAGCCACGAUGGGAACCCAGCCGAUCCAUCCAGUCCCAGCCAAUUCAAUCGCAGUAC------------
----------------...(((.....((((((.(((((((((..............))))))))).)))...((....))))).....)))................------------ ( -22.44, z-score =  -2.06, R)
>consensus
________________AUAGGCCUUCUCUGUGGUUUCCCAUCGCAAAUUAUAAGCCACGAUGGGAACCCAGCCGAUCCAUCCAGUCCCAGCCAAUUCAAUCGCAGUAC____________
...................(((.....((((((.(((((((((..............))))))))).)))...........))).....)))............................ (-16.48 = -17.80 +   1.32)

alignment

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secondary structure

Postscript

dotplot

Postscript

Window 3

Location 7,482,071 – 7,482,163
Length 92
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 72.77
Shannon entropy 0.42683
G+C content 0.50441
Mean single sequence MFE -29.74
Consensus MFE -24.24
Energy contribution -24.32
Covariance contribution 0.08
Combinations/Pair 1.21
Mean z-score -1.40
Structure conservation index 0.82
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.50
SVM RNA-class probability 0.944859
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 7482071 92 - 22422827
------------GUACUGCGAUUGAAUUGGCUGGGACUGGAUGGAUCGGCUGGGUUCCCAUCGUGGCUUAUAAUUUGCGAUGGGAAACCACAGAGAAGGCCUAU----------------
------------...(((..........((((((..(.....)..))))))((.(((((((((..(........)..))))))))).)).)))...........---------------- ( -30.80, z-score =  -1.91, R)
>droPer1.super_14 927667 81 - 2168203
------------GGAUCGGGAAUGGAUUGGAUUGGAUU-------UAGUCUGGGUUCCCAUCGCGGUUAACAAUUUGCAAUGGGAAA---GGGGAAGCACCGG-----------------
------------....(((....(((((((((...)))-------))))))...(((((((.((((........)))).))))))).---.........))).----------------- ( -22.20, z-score =  -0.69, R)
>droEre2.scaffold_4690 16396917 91 - 18748788
------------GUACUGCGAUUGAAUUGGCUGGGACUGGCUGGAUCGGCUGGGUUCCCAUCGCGGCUUAUAAUUUGCGAUGGGAAACCACAGAGAA-GCCUAU----------------
------------................((((....(((((((...))))(((.((((((((((((........)))))))))))).))))))...)-)))...---------------- ( -33.70, z-score =  -2.60, R)
>droYak2.chrX 7924408 120 + 21770863
GUUGGUGGUUUGGUAGUGAGAUUGAAUUGGCUGGGACUGGAUGGAUCGGCUGGGUUCCCAGCGUGGCUUAUAAUUUGCGAUGGGAAACCACAGUGAAAACCUAUGUAUCUGUAUCUGUAU
......(((((..((.((..........((((((..(.....)..))))))((.((((((.((..(........)..)).)))))).)).)).)).)))))................... ( -31.20, z-score =   0.13, R)
>droSec1.super_24 689897 92 - 912625
------------GUACUGCGAUUGAAUUGGCUGGGACUGGAUGGAUCGGCUGGGUUCCCAUCGUGGCUUAUAAUUUGCGAUGGGAAACCACAGAGAAGGCCUAU----------------
------------...(((..........((((((..(.....)..))))))((.(((((((((..(........)..))))))))).)).)))...........---------------- ( -30.80, z-score =  -1.91, R)
>consensus
____________GUACUGCGAUUGAAUUGGCUGGGACUGGAUGGAUCGGCUGGGUUCCCAUCGUGGCUUAUAAUUUGCGAUGGGAAACCACAGAGAAGGCCUAU________________
...............(((..........((((((..(.....)..))))))((.((((((((((((........)))))))))))).)).)))........................... (-24.24 = -24.32 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:23:51 2011