| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,544,553 – 10,544,643 |
| Length | 90 |
| Max. P | 0.820229 |
| Location | 10,544,553 – 10,544,643 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 68.62 |
| Shannon entropy | 0.57557 |
| G+C content | 0.41582 |
| Mean single sequence MFE | -22.21 |
| Consensus MFE | -8.90 |
| Energy contribution | -9.85 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.820229 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10544553 90 + 23011544 GUCGCUCUCAAACUGUAGUCAAACUGUCAAGUUAGA-AUGUUCGAAUCGAGCCAGCU---CAUGUUCGAAUCGAACUUCAGUCAACAAAUAACA-- .............(((.(.(.((((....)))).((-(.((((((.((((((.....---...)))))).))))))))).).).))).......-- ( -20.70, z-score = -2.16, R) >droSim1.chr2L 10348810 90 + 22036055 GUCGCUCUCAAACUGUAUUCAAACUGUUAAGUUGGA-AGGUUCGAAUCGAGCCAGCU---UAUGUUCGAAUCGAACUUUAGUCAACAAAUAAAU-- ..........(((.((......)).)))..((((((-((((((((.((((((.....---...)))))).)))))))))..)))))........-- ( -23.00, z-score = -2.89, R) >droSec1.super_3 5971130 90 + 7220098 GUCGCUCUCAAACUGUAUUCAAACUGUUAAGUUGGA-AGGUUCGAAUCGAGCCAGUU---UAUGUUCGAAUCGAACUUCAGUCAACAAAUAAAU-- ..........(((.((......)).)))..(((((.-((((((((.((((((.....---...)))))).))))))))...)))))........-- ( -22.90, z-score = -2.96, R) >droYak2.chr2L 6953728 90 + 22324452 GUGGCUCUCAAACUGUAUUCGAACUGUUGAGUUCGA-AGGUUGCAGUCGAACAGGCU---CGUGUUCGAAUCAAGCUCAAGUCAACAAAUAAAU-- .(((((......(((((((((((((....)))))))-)...)))))(((((((....---..)))))))..........)))))..........-- ( -24.70, z-score = -2.02, R) >droEre2.scaffold_4929 11758453 89 - 26641161 GUGCCUCUCAAACUGUAUUCGAACUGUUGAGUUAGA-AGGUUCGAAUCAAACAG-CU---CGUGUUCGAAUCGAACUCAAGUCAGCCAAUAAAU-- (.((........(((((((((((((.((......))-.)))))))))...))))-..---.(.(((((...))))).)......))).......-- ( -18.00, z-score = -0.69, R) >dp4.chr4_group4 2751362 96 + 6586962 UUCAAAUUUAAAUUAUUUGCAUCUUGGCGCUCGAAGCAAACCCGGUUUGAGUUCGUCGAACAUGUUGGCAUCAAACCCGAAGCAGGCCGAGGCCGA ..(((((.......)))))....(((((.((((..((......(((((((....(((((.....))))).)))))))........))))))))))) ( -23.94, z-score = 0.10, R) >consensus GUCGCUCUCAAACUGUAUUCAAACUGUUAAGUUAGA_AGGUUCGAAUCGAGCCAGCU___CAUGUUCGAAUCGAACUCAAGUCAACAAAUAAAU__ ..............................(((.((..(((((((.((((((...........)))))).)))))))....))))).......... ( -8.90 = -9.85 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:30:26 2011