| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,470,279 – 7,470,375 |
| Length | 96 |
| Max. P | 0.699935 |
| Location | 7,470,279 – 7,470,375 |
|---|---|
| Length | 96 |
| Sequences | 8 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 62.20 |
| Shannon entropy | 0.82550 |
| G+C content | 0.60349 |
| Mean single sequence MFE | -32.89 |
| Consensus MFE | -13.53 |
| Energy contribution | -14.31 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.56 |
| Mean z-score | -0.64 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.699935 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7470279 96 - 22422827 AUCCGCUCGCUGGUGGCGA-UGGGCUGGCGAUAGCGUCUUCCCUUUGGCAAACGCUUGAUUCGCGAGCUCACGCGCUCCACAGAACGAUGAUCCUGC ...((.((..(((.((((.-((((((.((((.(((((...((....))...)))))....)))).))))))))).).)))..)).)).......... ( -35.80, z-score = -0.92, R) >droSim1.chrX 5998260 96 - 17042790 AUCCGCUCGCUGGUGGCGA-UGGGCUGGCGAUAGCGUCUUCCCUUUGGCAAACGCUUGAUUCGCGAGCUCACGCGCUCCACAGAACGAUGAUCCUGC ...((.((..(((.((((.-((((((.((((.(((((...((....))...)))))....)))).))))))))).).)))..)).)).......... ( -35.80, z-score = -0.92, R) >droSec1.super_24 678407 96 - 912625 AUCCGCUCGCUGGUGGCGA-UGGGCUGGCGAUAGCGUCUUCCCUUUGGCAAACGCUUGAUUCGCGAGCUCACGCGCUCCACAGAACGAUGAUCCUGC ...((.((..(((.((((.-((((((.((((.(((((...((....))...)))))....)))).))))))))).).)))..)).)).......... ( -35.80, z-score = -0.92, R) >droYak2.chrX 7910710 96 + 21770863 AUCCGCUCGCUGGUGGCGA-UGGGCUGGCGAUAGCGUCUGCACGUUGGCAAACGCUUGAUUCGCGAGCUCACGCGCUCCACAGAACGAUGAUCCUGC ...((.((..(((.((((.-((((((.((((.(((((.(((......))).)))))....)))).))))))))).).)))..)).)).......... ( -39.80, z-score = -1.45, R) >droEre2.scaffold_4690 16385021 96 - 18748788 AUCCGCUCGCUGGUGGCGU-UGGGCUGGCGAUAGCGUCUGCCACUUGGCGAACGCUUGAUUCGCGAGCUCACGCGCUCCACAGAACGAUGAUCCUGC ...((.((..(((.(((((-((((((.((((.(((((.((((....)))).)))))....)))).)))))).))))))))..)).)).......... ( -43.50, z-score = -2.52, R) >droAna3.scaffold_13117 317948 78 - 5790199 AUCCUUUCACCGGAGGCGG-CGGGCUGGCGG------------------AACCGCUUCGUUCGCGAGCUCACACGCUCCAGAGACUUCCGAUCCGGC .........(((((..(((-(((((.((((.------------------...))))..))))))((((......))))..........)).))))). ( -30.20, z-score = -0.55, R) >droWil1.scaffold_180777 3284214 82 - 4753960 -------UGCUUUCGAUGGUUUUGCUUGCUGUUGCAUUGCCUUAUCGGCACAUACCUCAAUAACAGUCGCUGCCGCAUCUGCAUCCUCC-------- -------(((....(.((((...((..(((((((...((((.....))))..........))))))).)).)))))....)))......-------- ( -16.52, z-score = 0.21, R) >droVir3.scaffold_12970 8208155 87 + 11907090 AUCUGCGAUGUGGCGGCGGCUGGGCCAGC----------UCCUGAAGGCGUGCGCUGAUCUUAUAGACGCGCUUGACCCGUUUGACCGGGGUAUCAU ......(((((..((((((.((((.((((----------(......)))((((((((......))).))))).)).)))).))).)))..))))).. ( -25.70, z-score = 1.95, R) >consensus AUCCGCUCGCUGGUGGCGA_UGGGCUGGCGAUAGCGUCUUCCCUUUGGCAAACGCUUGAUUCGCGAGCUCACGCGCUCCACAGAACGAUGAUCCUGC ...........((.((((...(((((.((((...............(((....)))....)))).)))))...)))))).................. (-13.53 = -14.31 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:23:47 2011