| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,458,589 – 7,458,681 |
| Length | 92 |
| Max. P | 0.850616 |
| Location | 7,458,589 – 7,458,681 |
|---|---|
| Length | 92 |
| Sequences | 12 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 93.47 |
| Shannon entropy | 0.12861 |
| G+C content | 0.35265 |
| Mean single sequence MFE | -12.11 |
| Consensus MFE | -10.63 |
| Energy contribution | -10.64 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.850616 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7458589 92 - 22422827 ------AUAAAAACAAGCCAAAG-----GAAAACCCCAAAGUUAACCAACAUUAACAUUUAAUCGAACCUCAUGUUCAGUAGAGCAUGUCUCCUGUUACAUAC-------------- ------...............((-----((..........(((((......)))))..............(((((((....)))))))..)))).........-------------- ( -13.40, z-score = -2.05, R) >droSim1.chrX 5986227 92 - 17042790 ------AUAAAAACAAGCCAAAG-----GAAAACCCCAAAGUUAACCAACAUUAACAUUUAAUCGAACCUCAUGUUCAGUAGAGCAUGUCUCCUGUUACAUAC-------------- ------...............((-----((..........(((((......)))))..............(((((((....)))))))..)))).........-------------- ( -13.40, z-score = -2.05, R) >droSec1.super_24 666477 92 - 912625 ------AUAAAAACAAGCCAAAG-----GAAAACCCCAAAGUUAACCAACAUUAACAUUUAAUCGAACCUCAUGUUCAGUAGAGCAUGUCUCCUGUUACAUAC-------------- ------...............((-----((..........(((((......)))))..............(((((((....)))))))..)))).........-------------- ( -13.40, z-score = -2.05, R) >droYak2.chrX 7897133 92 + 21770863 ------AUAAAAACAAGCCAAAG-----GAAAACCCCAAAGUUAACCAACAUUAACAUUUAAUCGAACCUCAUGUUCAGUAGAGCAUGUCUCCUGUUACAUAC-------------- ------...............((-----((..........(((((......)))))..............(((((((....)))))))..)))).........-------------- ( -13.40, z-score = -2.05, R) >droEre2.scaffold_4690 16372868 92 - 18748788 ------AUAAAAACAAGCCAAAG-----GAAAACCCCAAAGUUAACCAACAUUAACAUUUAAUCGAACCUCAUGUUCAGUAGAGCAUGUCUCCUGUUACAUAC-------------- ------...............((-----((..........(((((......)))))..............(((((((....)))))))..)))).........-------------- ( -13.40, z-score = -2.05, R) >droAna3.scaffold_13117 306251 92 - 5790199 ------AUAAAAACAAGCCAAAG-----AAAAACCCCAAAGUUAACCAACAUUAACAUUUAAUCGAACCUCAUGUUCAGUAGAGCAUGUCUCCUGUUACAUAC-------------- ------.....((((........-----............(((((......)))))..............(((((((....))))))).....))))......-------------- ( -10.80, z-score = -1.87, R) >dp4.chrXL_group1e 11449492 92 - 12523060 ------AUAAAAACAAGCCAAAG-----AAAAACCCCAAAGUUAACCAACAUUAACAUUUAAUCGAACCUCAUGUUCAGUAGAGCAUGUCUCCUGUUACAUAC-------------- ------.....((((........-----............(((((......)))))..............(((((((....))))))).....))))......-------------- ( -10.80, z-score = -1.87, R) >droPer1.super_14 898395 92 - 2168203 ------AUAAAAACAAGCCAAAG-----AAAAACCCCAAAGUUAACCAACAUUAACAUUUAAUCGAACCUCAUGUUCAGUAGAGCAUGUCUCCUGUUACAUAC-------------- ------.....((((........-----............(((((......)))))..............(((((((....))))))).....))))......-------------- ( -10.80, z-score = -1.87, R) >droWil1.scaffold_180777 1428350 100 + 4753960 ---AAAAAAACAACAAGCCAAAGAAAAAAAAAACCCCAAAGUUAACCAACAUUAACAUUUAAUCGAACCUCAUGUUCAGUAGAGCAUGUCUCCUGUUACAUAC-------------- ---........((((.........................(((((......)))))..............(((((((....))))))).....))))......-------------- ( -10.80, z-score = -1.97, R) >droVir3.scaffold_12970 3690151 98 - 11907090 AUGUGUAUAAAAGCAAGCCAAAG-----AAAAACCCCAAAGUUAACCAACAUUAACAUUUAAUCGAACCUCAUGUUCAGUAGAGCAUGUCUCCUGUUACAUAC-------------- .((((((................-----............(((((......)))))..............(((((((....)))))))........)))))).-------------- ( -13.30, z-score = -1.37, R) >droMoj3.scaffold_6473 8194075 92 - 16943266 -----AAAAAC-ACAAGCCAAAG-----AAAAACCCCAAAGUUAACCAACAUUAACAUUUAAUCGAACCUCAUGUUCAGUAGAGCAUGUCUCCUGUUACAUAC-------------- -----...(((-(..((......-----............(((((......)))))..............(((((((....))))))).))..))))......-------------- ( -11.00, z-score = -1.82, R) >droGri2.scaffold_15203 1796369 106 + 11997470 ------AAAAAAACAAGCCAAAG-----AAAAACCCCAAAGUUAACCAACAUUAACAUUUAAUCGAACCUCAUGUUCAGUAGAGCAUGUCUCCUGUUACAUACACACUUACACACAU ------.....((((........-----............(((((......)))))..............(((((((....))))))).....)))).................... ( -10.80, z-score = -1.20, R) >consensus ______AUAAAAACAAGCCAAAG_____AAAAACCCCAAAGUUAACCAACAUUAACAUUUAAUCGAACCUCAUGUUCAGUAGAGCAUGUCUCCUGUUACAUAC______________ ...........((((.........................(((((......)))))..............(((((((....))))))).....)))).................... (-10.63 = -10.64 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:23:44 2011