| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,430,574 – 7,430,683 |
| Length | 109 |
| Max. P | 0.551487 |
| Location | 7,430,574 – 7,430,683 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 72.13 |
| Shannon entropy | 0.51511 |
| G+C content | 0.48629 |
| Mean single sequence MFE | -31.47 |
| Consensus MFE | -13.81 |
| Energy contribution | -14.12 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.551487 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7430574 109 - 22422827 GCGGGGUGAAGAAUUCAAAUUAGA-GACUACCGGCAAG-----GAAAUGCUGAUGAAUUUAAGCAAAUUUCCCUUUCCGGAGAUAAUCAAACCACCCGUUUUGCUGGAUACUAAG ((((((((.....(((......))-).((.((((.(((-----((((((((..........))))..))).)))).))))))..........)))))....)))........... ( -24.90, z-score = -0.68, R) >droAna3.scaffold_13117 281997 115 - 5790199 GCCGGACGGGAAGACCAGCUGGGACUUCCACCAGAGCGCCCUCGACCUGAUGGCCAAACUGAAGUCCGAGCCGUACCCGGACAUUUUCCGUCCACCCCCCCUCGUGGGGGCCAAG ...((((((((((..(((((((........)))).(.(((.((.....)).))))...)))..(((((.(.....).))))).))))))))))...(((((....)))))..... ( -46.00, z-score = -1.70, R) >droEre2.scaffold_4690 16343836 109 - 18748788 GCCCGGUGGAGAAUUCGAUUUCCA-GACUACCGGCAAG-----GAAAUGCUGAUGAAUCUCAGCAAAUUUCCCUAUCCGGACCUAAUCCAUCCGCCUGUUCUGUUGGACACCAAG ....(((((((((......)))..-.....((((...(-----((((((((((......))))))..)))))....))))..........))))))(((((....)))))..... ( -32.60, z-score = -2.18, R) >droYak2.chrX 7866281 109 + 21770863 GACGGGUGGAAAAUUCGAUUUCCA-AACGACCGGCAGG-----GAAAUGCUGAUGAAUCUAAGCAAGUUUCCCUAUCCGGAGAUCAUACAUCCGCCCGUUUUGUUAGAGUCCAAG ((((((((((......(((((((.-..(....)..(((-----((((((((..........))))..)))))))....))))))).....))))))))))............... ( -36.70, z-score = -3.03, R) >droSec1.super_24 638769 109 - 912625 GCGGGGUGAAGAAUUUAAUAUAGA-GACUACCGGCAAG-----GAAAUGCUGAUGAAUCUAAGCAAAUUUCCCUAUCCGGAGAUAAUCAAACCGCCCGUUUUGCUAGAUACCAAG ((((..(((((..((((...))))-..)).((((...(-----((((((((..........))))..)))))....))))......)))..)))).................... ( -24.30, z-score = -0.71, R) >droSim1.chrX 5956309 109 - 17042790 GCGGGGUGAAGAAUUUAAUAUAGA-GACUACCGGCAAG-----GAAAUGCUGAUGAAUCUAAGCAAAUUUCCCUAUCCGGAGAUAAUCAAACCGCCCGUUUUGCUAGAUAACAAG ((((..(((((..((((...))))-..)).((((...(-----((((((((..........))))..)))))....))))......)))..)))).................... ( -24.30, z-score = -0.84, R) >consensus GCCGGGUGAAGAAUUCAAUUUAGA_GACUACCGGCAAG_____GAAAUGCUGAUGAAUCUAAGCAAAUUUCCCUAUCCGGAGAUAAUCAAACCGCCCGUUUUGCUAGAUACCAAG ...(((((.......................(((((...........)))))..............((((((......))))))........)))))((((....))))...... (-13.81 = -14.12 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:23:40 2011