| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,420,460 – 7,420,527 |
| Length | 67 |
| Max. P | 0.641899 |
| Location | 7,420,460 – 7,420,527 |
|---|---|
| Length | 67 |
| Sequences | 7 |
| Columns | 77 |
| Reading direction | forward |
| Mean pairwise identity | 81.72 |
| Shannon entropy | 0.31466 |
| G+C content | 0.52674 |
| Mean single sequence MFE | -22.61 |
| Consensus MFE | -14.03 |
| Energy contribution | -15.03 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.641899 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7420460 67 + 22422827 ----------AGGAGGUGGGGCUGCCACGAUUCGCAGCCAGCCAAAUCGAUUGAACUGCCUUCAUUAAAAGAAAAAC ----------.(((((..(((((((........))))))...(((.....)))..)..))))).............. ( -22.10, z-score = -2.51, R) >droSim1.chrX 5946247 67 + 17042790 ----------AGGAGGUGGGGCUGCCACGAUUCGCAGCCAGCCAAAUCGAUUGAACUGCCUUCAUUAAAAGAAAAAC ----------.(((((..(((((((........))))))...(((.....)))..)..))))).............. ( -22.10, z-score = -2.51, R) >droSec1.super_24 628411 67 + 912625 ----------AGGAGGUGGGGCUGCCACGAUUCGCAGCCAGCCAAAUCGAUUGAACUGCCUUCAUUAAAAGAAAAAC ----------.(((((..(((((((........))))))...(((.....)))..)..))))).............. ( -22.10, z-score = -2.51, R) >droYak2.chrX 7854942 67 - 21770863 ----------AGGAGGUGGGGCUGCCACGAUUCGCAGCCAGCCAAAUCGAUCGAACUGCCUUCAUUAAGUGGAAAAC ----------.(((((..(((((((........)))))).......((....)).)..))))).............. ( -22.40, z-score = -1.74, R) >droAna3.scaffold_13117 273441 67 + 5790199 ----------AGGAGGUGGGGCUGCCACGACUCGCAGCCAGCCAAAUCGAUCGAACUGCCGUCAUUAAACAGAAAAC ----------.(..((..(((((((........)))))).......((....)).)..))..).............. ( -18.80, z-score = -0.92, R) >dp4.chrXL_group1e 11408866 75 + 12523060 AGGCGGUGGCAUGGCACGGCGCAGCCACGACUCGUAGCCAGCCAAAUCGAUCGAACUGCCUUCAUUAAACUGAAA-- .(((((((((.((((((((((......)).).))).)))))))...((....))))))))((((......)))).-- ( -25.40, z-score = -1.49, R) >droPer1.super_14 857538 75 + 2168203 AGGCGGUGGCAUGGCACGGCGCAGCCACGACUCGUAGCCAGCCAAAUCGAUCGAACUGCCUUCAUUAAACUGAAA-- .(((((((((.((((((((((......)).).))).)))))))...((....))))))))((((......)))).-- ( -25.40, z-score = -1.49, R) >consensus __________AGGAGGUGGGGCUGCCACGAUUCGCAGCCAGCCAAAUCGAUCGAACUGCCUUCAUUAAAAGGAAAAC ...........((((((((((((((........)))))).......((....)).)))))))).............. (-14.03 = -15.03 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:23:39 2011