Locus 13558

Sequence ID dm3.chrX
Location 7,409,594 – 7,409,684
Length 90
Max. P 0.992536
window18665

overview

Window 5

Location 7,409,594 – 7,409,684
Length 90
Sequences 7
Columns 99
Reading direction forward
Mean pairwise identity 73.90
Shannon entropy 0.48867
G+C content 0.45069
Mean single sequence MFE -23.40
Consensus MFE -13.38
Energy contribution -13.97
Covariance contribution 0.59
Combinations/Pair 1.07
Mean z-score -2.39
Structure conservation index 0.57
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.55
SVM RNA-class probability 0.992536
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 7409594 90 + 22422827
---------GUUAGCCAGUCAUCCAGUUGGCUAUCUCUUUCUGCCAAUAAAAAUCUGGCAGCAAAAAUCUACGAAAAAGUCGGAAACACUUUGUCGGUG
---------(((.(((((.......((((((...........))))))......)))))))).........(((.(((((.(....)))))).)))... ( -26.32, z-score =  -4.23, R)
>droSim1.chrX 5935522 90 + 17042790
---------GUUAGCCAGUCAUCCAGUUGGCUAUCUCUUUCUGCCAAUAAAAAUCUGGCAGCAAAAAUCUACGAAAAAGUCGGAAACACUUUGUCGGUG
---------(((.(((((.......((((((...........))))))......)))))))).........(((.(((((.(....)))))).)))... ( -26.32, z-score =  -4.23, R)
>droSec1.super_24 617707 90 + 912625
---------GUUAGCCAGUCAUCCAGUUGGCUAUCUCUUUCUGCCAAUAAAAAUCUGGCAGCAAAAAUCUACGAAAAAGUCGGAAACACUUUGUCGGUG
---------(((.(((((.......((((((...........))))))......)))))))).........(((.(((((.(....)))))).)))... ( -26.32, z-score =  -4.23, R)
>droEre2.scaffold_4690 16321508 82 + 18748788
-----------------GUUAUCCAGUUGGCUAUCUCUUUCUGCCAAUAAAAAUCUGGCAGCAAAAAUCUACGAAAAAGUCGGAAACACUUUGUCGGUG
-----------------(((..(((((((((...........))))).......)))).))).........(((.(((((.(....)))))).)))... ( -18.41, z-score =  -2.43, R)
>droAna3.scaffold_13117 260725 70 + 5790199
--------------------------CCGUUCGCUCCGUUCUGCCAAUAAAAAUCUGGCAGCAAAAAAUU---AAAGCGUCGGAAGCACUUUGUCGGCG
--------------------------.....((((.....((((((.........))))))........(---((((.(.(....)).)))))..)))) ( -15.70, z-score =  -0.61, R)
>dp4.chrXL_group1e 11395015 99 + 12523060
UCUCGGUGCCGGUGCCGGUCCCCGUUUCGAGCGAAGUCGAAUGCCAAUAAAAAUCUGGCAGCAAAAAUCUACGAAAAAGUCGGAAACACUUUGUCGGUG
....((..(((....)))..))...(((((......)))))(((((.........)))))...........(((.(((((.(....)))))).)))... ( -27.20, z-score =  -0.83, R)
>droPer1.super_14 843510 99 + 2168203
UCUCGGUGCCUGUGCCGGUCCCCGUUUCGAGCGAAGUCGAAUGCCAAUAAAAAUCUGGCAGCAAAAAUCUACGAAAAAGUCGGAAACACUUUGUCGGUG
....((..((......))..))...(((((......)))))(((((.........)))))...........(((.(((((.(....)))))).)))... ( -23.50, z-score =  -0.16, R)
>consensus
_________GUUAGCCAGUCAUCCAGUUGGCUAUCUCUUUCUGCCAAUAAAAAUCUGGCAGCAAAAAUCUACGAAAAAGUCGGAAACACUUUGUCGGUG
........................................((((((.........))))))..........(((.(((((.(....)))))).)))... (-13.38 = -13.97 +   0.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:23:36 2011