| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,408,566 – 7,408,710 |
| Length | 144 |
| Max. P | 0.967455 |
| Location | 7,408,566 – 7,408,710 |
|---|---|
| Length | 144 |
| Sequences | 8 |
| Columns | 145 |
| Reading direction | reverse |
| Mean pairwise identity | 86.72 |
| Shannon entropy | 0.26791 |
| G+C content | 0.41135 |
| Mean single sequence MFE | -37.55 |
| Consensus MFE | -28.86 |
| Energy contribution | -29.13 |
| Covariance contribution | 0.27 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.78 |
| SVM RNA-class probability | 0.967455 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7408566 144 - 22422827 CGAAAGGUGAAAGCUAGGACAGUGGAAGAAAAUAUUCGCGUUGCUAACGAAUCAAAUAAAUUUGUUGGUCAAUUAAAAAACUGCAAAACGCGCACAAUUUCCACAUGUGUGGCAGCAACAACCACACAGCUCACCAGUUUUUUU- .....(((((..(((......(((((((((....)))(((((((((((((((.......))))))))).)))).........((.....)))).....))))))..((((((.........)))))))))))))).........- ( -39.80, z-score = -2.82, R) >droSim1.chrX 5934484 136 - 17042790 CGAAAGGUGAAAGCCAGGACAGUGGAAGA--------GCGUUGCUAACGAAUCAAAUAAAUUUGUUGGUCAAUUAAAAAACUGCAAAACGCGCACAAUUUCCACAUGUGUGGCAGCAACAACCACACAGCUCACCAGUUUUUUU- .....(((((..((.......(((((((.--------(((((((((((((((.......))))))))).)))).........((.....))))....))))))).(((((((.........)))))))))))))).........- ( -38.00, z-score = -2.16, R) >droSec1.super_24 616646 144 - 912625 CGAAAGGUGAAAGCCAGGACAGUGGAAGAAAAUAUUCGCGUUGCUAACGAAUCAAAUAAAUUUGUUGGUCAAUUAAAAAACUGCAAAACGCGCACAAUUUCCACAUGUGUGGCAGCAACAACCACACAGCUCACCAGUUUUUUU- .....(((((..((.......(((((((((....)))(((((((((((((((.......))))))))).)))).........((.....)))).....)))))).(((((((.........)))))))))))))).........- ( -39.20, z-score = -2.49, R) >droYak2.chrX 7841129 145 + 21770863 CGAAAGGUGAAAGCCAGGACAGUGGAAGAAAAUAUUCGCGUUGCUAACGAAUCAAAUAAAUUUGUUGGUCAAUUAAAAAACUGCAAAACGCGCACAAUUUCCACAUGUGUGGCAGCAACAACCACACAGCGCCAACAUUUUUUUU .....(((....))).((.(.(((((((((....)))(((((((((((((((.......))))))))).)))).........((.....)))).....)))))).(((((((.........)))))))..)))............ ( -37.90, z-score = -2.02, R) >droEre2.scaffold_4690 16320449 144 - 18748788 CGAAAGGUGAAAGCCAGGACAGUGGAAGAAAAUAUUCGCGUUGCUAACGAAUCAAAUAAAUUUGUUGGUCAAUUAAAAAACUGCAAAACGCGCACAAUUUCCACAUGUGUGGCAGCAACAACCACACAGACCACCAGUUUUUCU- .(((((((....))).((...(((((((((....)))(((((((((((((((.......))))))))).)))).........((.....)))).....)))))).(((((((.........)))))))..)).......)))).- ( -39.50, z-score = -2.76, R) >droAna3.scaffold_13117 259727 124 - 5790199 AGGAAGGUGGAAGCCAGGACAGUGGAAGAAAAUAUUCGCGUUGCUAACGAAUCAAAUAAAUUUGUUGGUCAAUUAAAAAACUGCAAAACGCGCACAAUUUCCACAUGUGUGGC-GCGGCAACAAC-------------------- ......((.(..((((.(.(((((((((((....)))(((((((((((((((.......))))))))).)))).........((.....)))).....)))))).))).))))-.).))......-------------------- ( -31.40, z-score = -1.17, R) >dp4.chrXL_group1e 11393555 128 - 12523060 ----AGGGGAAAGUCAGGGCAGUGGAAGAAAAUAUUCGCGUUGCUAACGAAUCAAAUAAAUUUGUUGGUCAAUUAAAAAACUGCAAAACGCGCAGAAUUUCCACAUGUGUGGAAGCAACAACUGCACUGCCC------------- ----............(((((((((((.......)))(((((((((((((((.......))))))))).)))).......((((.......))))...((((((....))))))))........))))))))------------- ( -39.60, z-score = -3.26, R) >droPer1.super_14 842078 128 - 2168203 ----AGGGGAAAGUCAGGGCAGUGGAAGAAAAUAUUCGCGUUGCUAACGAAUCAAAUAAAUUUGUUGGUCAAUUAAAAAACUGCAAAACGCGCAGAAUUUCCACAUGUGUGGAAGCAACAACUGCACUGCAC------------- ----........(.(((.(((((.(((.......)))(((((((((((((((.......))))))))).)))).......((((.......))))...((((((....))))))))....))))).))))..------------- ( -35.00, z-score = -2.30, R) >consensus CGAAAGGUGAAAGCCAGGACAGUGGAAGAAAAUAUUCGCGUUGCUAACGAAUCAAAUAAAUUUGUUGGUCAAUUAAAAAACUGCAAAACGCGCACAAUUUCCACAUGUGUGGCAGCAACAACCACACAGCUCACCAGUUUUUUU_ .....(((....)))......(((((((((....)))(((((((((((((((.......))))))))).)))).........((.....)))).....))))))..((((((.........)))))).................. (-28.86 = -29.13 + 0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:23:35 2011