Locus 13556

Sequence ID dm3.chrX
Location 7,407,321 – 7,407,386
Length 65
Max. P 0.725959
window18663

overview

Window 3

Location 7,407,321 – 7,407,386
Length 65
Sequences 5
Columns 69
Reading direction reverse
Mean pairwise identity 66.82
Shannon entropy 0.55657
G+C content 0.37298
Mean single sequence MFE -7.94
Consensus MFE -5.80
Energy contribution -5.84
Covariance contribution 0.04
Combinations/Pair 1.17
Mean z-score -0.46
Structure conservation index 0.73
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.51
SVM RNA-class probability 0.725959
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 7407321 65 - 22422827
----CCUUUUCCCCAUUGACUUGUUGUUUUGAUACCCUAUAUAGUUGUUCUUGGUAUACUUUAUUGUGA
----.........((..(((.....))).))(((((..(((....)))....)))))............ (  -4.10, z-score =   0.71, R)
>droEre2.scaffold_4690 16319235 51 - 18748788
----------CCUUG--------UUGCUUCAAUACCCUGUAUGGUACAUCUGGGUGUAUUGCGUUGUAU
----------.....--------.(((..(((((((((..(((...)))..))).))))))....))). (  -9.60, z-score =  -0.08, R)
>droYak2.chrX 7839649 67 + 21770863
CCUUUUUUUUCCCCAAUGCCUGCUUGUUCUAAUACCCUAUAAAGUACUGCUGGGUAUAUAUUUUUGU--
...........((((..((.(((((................)))))..)))))).............-- (  -7.59, z-score =  -0.23, R)
>droSec1.super_24 615450 57 - 912625
----CCUUUUCCCCA--------UUGUUUUGAUACCCUAUAUAGUUGUUCUGGGUAUACUUUAUCGUGA
----.........((--------(.((....((((((.(((....)))...)))))).....)).))). (  -9.20, z-score =  -1.34, R)
>droSim1.chrX 5933259 57 - 17042790
----CCUUUUCCCCA--------UUGUUUUGAUACCCUAUAUAGUUGUUCUGGGUAUACUUUAUCGUGA
----.........((--------(.((....((((((.(((....)))...)))))).....)).))). (  -9.20, z-score =  -1.34, R)
>consensus
____CCUUUUCCCCA________UUGUUUUGAUACCCUAUAUAGUUGUUCUGGGUAUACUUUAUUGUGA
...............................((((((..............))))))............ ( -5.80 =  -5.84 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:23:34 2011