| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,402,489 – 7,402,558 |
| Length | 69 |
| Max. P | 0.731113 |
| Location | 7,402,489 – 7,402,558 |
|---|---|
| Length | 69 |
| Sequences | 11 |
| Columns | 70 |
| Reading direction | reverse |
| Mean pairwise identity | 91.00 |
| Shannon entropy | 0.20547 |
| G+C content | 0.36095 |
| Mean single sequence MFE | -12.57 |
| Consensus MFE | -10.30 |
| Energy contribution | -10.31 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.731113 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7402489 69 - 22422827 GGCAG-CAAAUCAAAAAACAAUUACGCGGCAAAUGACAUUAUCAAAUGUCAAAUGUCAUGUUCGGCGAGG .....-..................(((.(...((((((((...........))))))))...).)))... ( -13.00, z-score = -1.26, R) >droSim1.chrX 5928114 70 - 17042790 GGCAGCCAAAUCAAAAAACAAUUACGCGGCAAAUGACAUUAUCAAAUGUCAAAUGUCAUGUUCAGCGAGG (((((((....................)))...(((((((....)))))))..))))............. ( -12.95, z-score = -1.28, R) >droYak2.chrX 7834463 69 + 21770863 GGCAG-CAAAUCAAAAAACAAUUACGCGGCAAAUGACAUUAUCAAAUGUCAAAUGUCAUGUUCGGUGACU .....-............((...(((.((((..(((((((....)))))))..)))).)))....))... ( -12.90, z-score = -1.15, R) >droEre2.scaffold_4690 16314282 69 - 18748788 GGCAG-CAAAUCAAAAAACAAUUACGCGGCAAAUGACAUUAUCAAAUGUCAAAUGUCAUGUUCGGCGAGG .....-..................(((.(...((((((((...........))))))))...).)))... ( -13.00, z-score = -1.26, R) >droAna3.scaffold_13117 252423 64 - 5790199 GGCAU-CAAAUCAAAAAACAAUUACGCGGCAAAUGACAUUAUCAAAUGUCAAACGUCGUGCCCGC----- .....-..................((((((...(((((((....)))))))...)))))).....----- ( -14.20, z-score = -2.21, R) >dp4.chrXL_group1e 11388109 69 - 12523060 GGCAU-CAAAUCAAAAAACAAUUACGCGGCAAAUGACAUUAUCAAAUGUCAAAUGUCAUGUUCGGAAAGG .....-............(....(((.((((..(((((((....)))))))..)))).)))...)..... ( -11.50, z-score = -1.77, R) >droPer1.super_14 836123 69 - 2168203 GGCAU-CAAAUCAAAAAACAAUUACGCGGUAAAUGACAUUAUCAAAUGUCAAAUGUCAUGUUCGGAAAGG (((((-...............((((...)))).(((((((....))))))).)))))............. ( -9.80, z-score = -1.13, R) >droWil1.scaffold_180777 1373162 68 + 4753960 -GCAU-CAAAUCAAAAAACAAUUACGCGGCAAAUGACAUUAUCAAAUGUCAAAUGUCAUGUUUUGGAAAA -....-............(((..(((.((((..(((((((....)))))))..)))).))).)))..... ( -13.60, z-score = -2.37, R) >droMoj3.scaffold_6473 8119292 68 - 16943266 GGCAU-CAAAUCAAAAAACAAUUACGCGGCAAAUGACAUUAUCAAAUGUCAAAUGUCAUGUUUGAAAAA- .....-............(((..(((.((((..(((((((....)))))))..)))).)))))).....- ( -12.30, z-score = -1.96, R) >droVir3.scaffold_12970 3619688 68 - 11907090 AGCAU-CAAAUCAAAAAACAAUUACGCGGCAAAUGACAUUAUCAAAUGUCAAAUGUCAUGUUUGGAAAG- .....-............(((..(((.((((..(((((((....)))))))..)))).)))))).....- ( -12.50, z-score = -2.06, R) >droGri2.scaffold_15203 1728975 68 + 11997470 AGCAU-CAAAUCAAAAAACAAUUACGCGGCAAAUGACAUUAUCAAAUGUCAAAUGUCAUGUUUGGAAAA- .....-............(((..(((.((((..(((((((....)))))))..)))).)))))).....- ( -12.50, z-score = -1.89, R) >consensus GGCAU_CAAAUCAAAAAACAAUUACGCGGCAAAUGACAUUAUCAAAUGUCAAAUGUCAUGUUCGGAAAGG ...........................((((..(((((((....)))))))..))))............. (-10.30 = -10.31 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:23:33 2011