| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,322,104 – 7,322,211 |
| Length | 107 |
| Max. P | 0.590842 |
| Location | 7,322,104 – 7,322,211 |
|---|---|
| Length | 107 |
| Sequences | 12 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 78.65 |
| Shannon entropy | 0.45295 |
| G+C content | 0.46338 |
| Mean single sequence MFE | -29.78 |
| Consensus MFE | -14.57 |
| Energy contribution | -14.42 |
| Covariance contribution | -0.15 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.590842 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7322104 107 + 22422827 ---AGUGGAGACGGCGGCGUCGUCUCAAUCUGAUUGAUUUAGAAUUCCAAUUGAGACUGCAUGAAAUAUGUUUGCUUCGUGUCU--GGCUUCUGGCUGCUGUCGUUGCCGGA ---..(((..(((((((((((((((((((((((.....))))).......))))))).(((((((.((....)).)))))))..--.......))).))))))))..))).. ( -36.31, z-score = -2.00, R) >droSim1.chrX 5849340 107 + 17042790 ---AGUGGAGACGGCGGCGUCGUCUCAAUCUGAUUGAUUUAGAAUUCCAAUUGAGACUGCAUGAAAUAUGUUUGCUUCGUGUCU--GGCUUCUGGCUGCUGUCGUUGCCGGA ---..(((..(((((((((((((((((((((((.....))))).......))))))).(((((((.((....)).)))))))..--.......))).))))))))..))).. ( -36.31, z-score = -2.00, R) >droSec1.super_24 531396 107 + 912625 ---AGUGGAGACGGCGGCGUCGUCUCAAUCUGAUUGAUUUAGAAUUCCAAUUGAGACUGCAUGAAAUAUGUUUGCUUCGUGUCU--GGCUUCUGGCUGCUGUCGUUGCCGGA ---..(((..(((((((((((((((((((((((.....))))).......))))))).(((((((.((....)).)))))))..--.......))).))))))))..))).. ( -36.31, z-score = -2.00, R) >droYak2.chrX 7748434 107 - 21770863 ---AGUGGAGACGGCGGCGUCGUCUCAAUCUGAUUGAUUUAGAAUUCCAAUUGAGACUGCAUGAAAUAUGUUUGCUUCGUGUCU--GGCUUCUGGCUGCUGUCGUUGCCGGA ---..(((..(((((((((((((((((((((((.....))))).......))))))).(((((((.((....)).)))))))..--.......))).))))))))..))).. ( -36.31, z-score = -2.00, R) >droEre2.scaffold_4690 16233151 107 + 18748788 ---AGUGGAGACGGCGGCGUCGUCUCAAUCUGAUUGAUUUAGAAUUCCAAUUGAGACUGCAUGAAAUAUGUUUGCUUCGUGUCU--GGCUUCUGGCUGCUGUCGUUGCCGGA ---..(((..(((((((((((((((((((((((.....))))).......))))))).(((((((.((....)).)))))))..--.......))).))))))))..))).. ( -36.31, z-score = -2.00, R) >droAna3.scaffold_13117 165890 110 + 5790199 AGUGGAGGAGCCGGCGUCGUCGUCUCAAUCUGAUUGAUUUAGAAUUCCAAUUGAGACUGCAUGAAAUAUGUUUGCUUCGUGUCU--GGCUUCUGGCUCCUGUCGCUGCUGGG ((((((((((((((.(((...((((((((((((.....))))).......))))))).(((((((.((....)).)))))))..--)))..))))))))).)))))...... ( -39.81, z-score = -2.82, R) >dp4.chrXL_group1e 11300037 100 + 12523060 ---AGCUGAGUUGCUGGCCCCGUCUCAAUCUGAUUGAUUUAGAAUUCCAAUUGAGACUGCAUGAAAUAUGUUUGCUUCGUGUCU--GGCUUCUGCCUGAUGUCGG------- ---..(((((((((.((((..((((((((((((.....))))).......))))))).(((((((.((....)).)))))))..--))))...))..))).))))------- ( -24.31, z-score = -0.73, R) >droPer1.super_14 742901 100 + 2168203 ---AGCUGAGUUGCUGGCCCCGUCUCAAUCUGAUUGAUUUAGAAUUCCAAUUGAGACUGCAUGAAAUAUGUUUGCUUCGUGUCU--GGCUUCUGCCUGAUGUCGG------- ---..(((((((((.((((..((((((((((((.....))))).......))))))).(((((((.((....)).)))))))..--))))...))..))).))))------- ( -24.31, z-score = -0.73, R) >droWil1.scaffold_180777 1290425 98 - 4753960 -----AGCAUCCGGUCGGGUCGUCUCAAUCUGAUUGAUUUAGAAUUCCAAUUGAGACUGCAUGAAAUAUGUUUGUCUCAUGUCU--GGCUUCUGCCUGCUGUCGA------- -----((((..(((...((((((((((((((((.....))))).......))))))).((((((.(((....))).))))))..--)))).)))..)))).....------- ( -26.71, z-score = -1.18, R) >droGri2.scaffold_15203 1628565 95 - 11997470 ---------------GUCAUCGUCUCAAUCUGAUUGAUUUAGAAUUCCAAUUGAGACUACAUGAAAUAUGUUUGUCUCGUGUCUCCAACUGCCACUCGAAUUCCUUCUGC-- ---------------((((..(((.......)))))))...((((((.....(((((.(((((...)))))..)))))(((.(.......).)))..)))))).......-- ( -17.30, z-score = -1.00, R) >droMoj3.scaffold_6473 7986395 94 + 16943266 ---------------GCCAUCGUCUCAAUCUGAUUGAUUUAGAAUUCCAAUUGAGACUGCAUGAAAUAUGUUUGUCUCGUGUCUCUAACUGCC-UUCGGGCUGCAACCAC-- ---------------((....((((((((((((.....))))).......))))))).((((((.(((....))).))))))........(((-....))).))......-- ( -24.11, z-score = -2.29, R) >droVir3.scaffold_12970 3514846 94 + 11907090 ---------------GUCAUCGUCUCAAUCUGAUUGAUUUAGAAUUCCAAUUGAGACUGCAUGAAAUAUGUUUGUCUCGUGUCUCCAACUGCU-UUCUGACCGCUGCUGC-- ---------------((((..((((((((((((.....))))).......))))))).((((((.(((....))).))))))...........-...)))).((....))-- ( -19.31, z-score = -0.93, R) >consensus ___AGUGGAGACGGCGGCGUCGUCUCAAUCUGAUUGAUUUAGAAUUCCAAUUGAGACUGCAUGAAAUAUGUUUGCUUCGUGUCU__GGCUUCUGGCUGCUGUCGUUGCCG__ .....................((((((((((((.....))))).......))))))).((((((..((....))..)))))).............................. (-14.57 = -14.42 + -0.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:23:22 2011