| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,300,819 – 7,300,873 |
| Length | 54 |
| Max. P | 0.791668 |
| Location | 7,300,819 – 7,300,873 |
|---|---|
| Length | 54 |
| Sequences | 8 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 88.64 |
| Shannon entropy | 0.21623 |
| G+C content | 0.40293 |
| Mean single sequence MFE | -11.12 |
| Consensus MFE | -7.83 |
| Energy contribution | -7.91 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.791668 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7300819 54 + 22422827 CAUUUCUCGUUC--UUGUUUAAAAUUCAAUCGCUGCACUCAACUGUGCACGAAAUG-- ((((((..((..--(((.........)))..))(((((......))))).))))))-- ( -10.40, z-score = -2.62, R) >dp4.chrXL_group1e 11276871 54 + 12523060 CAUUUGUCGUUC--UUGUUUAAAAUUCAAUCGCUGCACUCAAGUGUGUACGAGAUG-- ............--...............(((.(((((......))))))))....-- ( -8.20, z-score = -0.05, R) >droPer1.super_14 718786 55 + 2168203 CAUUUGUCGUUCC-UUGUUUAAAAAUCAAUCGCUGCACUCAAGUGUGUACGAGAUG-- .............-..........(((..(((.(((((......))))))))))).-- ( -8.30, z-score = -0.35, R) >droSim1.chrX 5826766 56 + 17042790 CAUUUCUCGUUC--UUGUUUAAAAUUCAAUCGCUGCACUCAACUGUGCACGAGAAAUG ((((((((((..--(((.........))).....((((......)))))))))))))) ( -16.10, z-score = -4.32, R) >droSec1.super_24 510406 56 + 912625 CAUUUCUCGUUC--UUGUUUAAAAUUCAAUCGCUGCACUCAACUGUGCACGAGAAAUG ((((((((((..--(((.........))).....((((......)))))))))))))) ( -16.10, z-score = -4.32, R) >droEre2.scaffold_4690 16208164 54 + 18748788 CAUUUCUCGUUC--UUGUUUAAAAUUCAAUCGCUGCACUCAACUGUGCUCCAAAUG-- ............--.................(..((((......))))..).....-- ( -6.00, z-score = -1.70, R) >droYak2.chrX 7725092 54 - 21770863 CAUUUCUCGUUC--UUGUUUAAAAUUCAAUCGCUGCACUCAACUGUGCACGAAAUG-- ((((((..((..--(((.........)))..))(((((......))))).))))))-- ( -10.40, z-score = -2.62, R) >droAna3.scaffold_13117 145006 56 + 5790199 CAUUUGUCGUCCUCGUGUUUAAAAUUCAAUCGCUGCACUCAAGUGUGCUCGGGACG-- .......((((((.(((.............))).((((......))))..))))))-- ( -13.42, z-score = -1.87, R) >consensus CAUUUCUCGUUC__UUGUUUAAAAUUCAAUCGCUGCACUCAACUGUGCACGAGAUG__ .............................(((.(((((......))))))))...... ( -7.83 = -7.91 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:23:20 2011