Locus 13542

Sequence ID dm3.chrX
Location 7,299,685 – 7,299,805
Length 120
Max. P 0.982828
window18646

overview

Window 6

Location 7,299,685 – 7,299,805
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 90.56
Shannon entropy 0.13009
G+C content 0.35000
Mean single sequence MFE -26.40
Consensus MFE -23.53
Energy contribution -24.20
Covariance contribution 0.67
Combinations/Pair 1.08
Mean z-score -2.61
Structure conservation index 0.89
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.12
SVM RNA-class probability 0.982828
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 7299685 120 + 22422827
CUCAGUUGUGCGAUCACAUUUAAUCUUAAUGUUUAUUGCGUUUUAAAUAAUUUUAGAGCUGUAAACCUGAAGAAUUUCUAUUAUUUCCGUUUUUGUCAUACAACUGCGCACUUUACUUAC
...(((.((((............((((...((((((...((((((((....)))))))).))))))...))))...............((..(((.....)))..))))))...)))... ( -21.50, z-score =  -1.69, R)
>droSec1.super_24 509314 120 + 912625
CGCAGUUGUGCGAUCACAUUUAAUCUUAAUGUUUAUUGCGUUUUAAACAAUUUUAGAGCCGAAAACACGCGAAAUUUCGAUUAUUUCCGUUUUUGUCAAACAACUGCGCACCUCACUCAC
((((((((((((((.(((((.......)))))..)))))((((((((....))))))))(((((..(((.(((((.......)))))))))))))....)))))))))............ ( -29.40, z-score =  -3.13, R)
>droSim1.chrX 5825641 120 + 17042790
CGCAGUUGUGCGAUCACAUUUAAUCUUAAUGUUCAUUGCGUUUUAAACAAUUUAAAAGCCGAAAACACGCGAAAUUUCGAUUAUUUCCGUUUUUGUCAAACAACUGCGCACCUUACUCAC
((((((((((((((.(((((.......)))))..))))).............(((((((.((((.....(((....)))....)))).)))))))....)))))))))............ ( -28.30, z-score =  -3.02, R)
>consensus
CGCAGUUGUGCGAUCACAUUUAAUCUUAAUGUUUAUUGCGUUUUAAACAAUUUUAGAGCCGAAAACACGCGAAAUUUCGAUUAUUUCCGUUUUUGUCAAACAACUGCGCACCUUACUCAC
((((((((((((((.(((((.......)))))..)))))((((((((....))))))))(((((((....(((((.......))))).)))))))....)))))))))............ (-23.53 = -24.20 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:23:20 2011