Locus 13540

Sequence ID	dm3.chrX
Location	7,284,286 – 7,284,398
Length	112
Max. P	0.740893

overview

Window 4

Location	7,284,286 – 7,284,398
Length	112
Sequences	4
Columns	112
Reading direction	forward
Mean pairwise identity	65.31
Shannon entropy	0.53510
G+C content	0.32397
Mean single sequence MFE	-22.12
Consensus MFE	-11.20
Energy contribution	-11.38
Covariance contribution	0.19
Combinations/Pair	1.37
Mean z-score	-1.31
Structure conservation index	0.51
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.55
SVM RNA-class probability	0.740893
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chrX 7284286 112 + 22422827
CCAAAUUCUAAAUGCCUGCUGUUAAACUUGCAGUUUCUAUCUUUUGUAAGAUUAGUGAUGUUACUGAUUAUUAUUUAGAUAGUGCGCUACAGAAUUCGUAGCUAGCAUACAA
...........((((..((((..((..(((.(((..((((((...((((((((((((....)))))))).))))..))))))...))).)))..))..))))..)))).... ( -26.30, z-score =  -1.77, R)
>droSim1.chrX_random 2254741 99 + 5698898
--------CCAAUUUCUGCUGUUAAACUUGCAGUUUCUAUCUUUUGUAAGAUUAGUGGUGUUACUGAUUAUUAUUUAGAUAGUGC--UAUGGAAAUCGUAGAUGUAUUA---
--------......(((((.(((......(((....((((((...((((((((((((....)))))))).))))..)))))))))--......))).))))).......--- ( -19.70, z-score =  -1.00, R)
>droSec1.super_24 493650 99 + 912625
--------CCAAUUUCUGCUGUUAAACUUGCAGUUUCUAUCUUUUGUAAGAUUAGUGGUGUUACUGAUUAUUAUUUAGAUAGUGC--UAUAGAAUUCGUAGAUGUAUUA---
--------......(((((.(((......(((....((((((...((((((((((((....)))))))).))))..)))))))))--.....)))..))))).......--- ( -19.00, z-score =  -0.85, R)
>droEre2.scaffold_4690 16192417 92 + 18748788
------GCCAAAAGCCAACAGUUA----UAAGUUUUCUAUCUUUUGUAAGGUACUGAGACUUUGCGACUUGCAUGCCUUUAAUAG--UAUGUGCAUUGUUGGUA--------
------.......((((((((((.----.(((((((.((((((....))))))..)))))))...)))..((((((........)--)))))....))))))).-------- ( -23.50, z-score =  -1.61, R)
>consensus
________CAAAUGCCUGCUGUUAAACUUGCAGUUUCUAUCUUUUGUAAGAUUAGUGGUGUUACUGAUUAUUAUUUAGAUAGUGC__UAUAGAAAUCGUAGAUAUAUUA___
............(((((((.............((..((((((...((((((((((((....)))))))).))))..)))))).))............)))))))........ (-11.20 = -11.38 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:23:18 2011