| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,278,618 – 7,278,715 |
| Length | 97 |
| Max. P | 0.991431 |
| Location | 7,278,618 – 7,278,715 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 95.85 |
| Shannon entropy | 0.05680 |
| G+C content | 0.48088 |
| Mean single sequence MFE | -30.27 |
| Consensus MFE | -30.10 |
| Energy contribution | -30.10 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.51 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.48 |
| SVM RNA-class probability | 0.991431 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7278618 97 + 22422827 UACAGGAAGUUUUUUGCAAACAGCGAAAAAUGGGAUGAGUAGGGCGGAGAGGGAUAUAUUAUUUCCCCGGCCAGGUGAGUGCACUUGGCACUUGAGA ..((((..(((((((((.....)))))))))...........((.(((((...........))))))).((((((((....)))))))).))))... ( -30.30, z-score = -2.65, R) >droSec1.super_24 488056 95 + 912625 UGCAGGAAGUUUUUUGCAAACAGCGAAAAAUGGGAUGAGUAGGGAGGAGAGG--GAUAUUAUUUCCCCGGCCAGGUGAGUGCACUUGGCACUUGAGA ..((((..(((((((((.....)))))))))...........((.(((((..--.......))))))).((((((((....)))))))).))))... ( -30.20, z-score = -2.55, R) >droSim1.chrX 5821544 95 + 17042790 UGCAGGAAGUUUUUUGCAAACAGCGAAAAAUGGGAUGAGCAGGGAGGAGAGG--UAUAUUAUUUCCCCGGCCAGGUGAGUGCACUUGGCACUUGAGA ..((....(((((((((.....)))))))))....))..((((..((.((((--((...)))))).)).((((((((....)))))))).))))... ( -30.30, z-score = -2.31, R) >consensus UGCAGGAAGUUUUUUGCAAACAGCGAAAAAUGGGAUGAGUAGGGAGGAGAGG__UAUAUUAUUUCCCCGGCCAGGUGAGUGCACUUGGCACUUGAGA ..((((..(((((((((.....)))))))))...........((.(((((...........))))))).((((((((....)))))))).))))... (-30.10 = -30.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:23:17 2011