| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,275,616 – 7,275,729 |
| Length | 113 |
| Max. P | 0.742648 |
| Location | 7,275,616 – 7,275,729 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 124 |
| Reading direction | reverse |
| Mean pairwise identity | 66.95 |
| Shannon entropy | 0.61158 |
| G+C content | 0.42056 |
| Mean single sequence MFE | -21.39 |
| Consensus MFE | -9.32 |
| Energy contribution | -9.93 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.55 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.742648 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7275616 113 - 22422827 UACACUUUCACGUCUGUGUCCUUUCAGGAUAUAUUU------CCCCCCCAUUUUCUUUCAUCC-AUGCUAACUGUUUAUUUCUGUUGC----CAUUUUCGCCGGCGAAGGAAACCUUGCCAAUU ..............(((((((.....)))))))...------.....................-(((.((((...........)))).----))).......(((((.(....).))))).... ( -18.40, z-score = -1.02, R) >droEre2.scaffold_4690 16183760 112 - 18748788 --------UACGCCUAUAUCCGUUCAGGAUGUACUCAGGGAAAACCCCAAUUUUCCCUCAUCCAGUGUUAACAGUUUACUUCUGUUGC----CCUUUUCGCCGGCGAAGGAAACCUUGCCAAUC --------.((((.(((((((.....)))))))...((((((((......))))))))......))))((((((.......)))))).----..........(((((.(....).))))).... ( -32.10, z-score = -3.45, R) >droYak2.chrX 7698613 117 + 21770863 UACAUUUUCACGUUUAUAUCGCUUCAGGAUACAUUU------UCCCCCAAUUUUCCCGCAUCC-UUGCUAACAGUUUACUUUUGUUGCUAUGUAUUUUCGCCGGCGGAGGAAACCUCGCCAAUU ....................((...(((((((((..------...............(((...-.)))((((((.......))))))..))))))))).)).((((..(....)..)))).... ( -23.50, z-score = -1.79, R) >droSec1.super_24 485065 114 - 912625 UAGACUUUCUCGUCUUUGUCCCUUCAGGAUACAUUU-----UCCCCCCCAUUUUCUUUCAUCC-AUGUUAACUGUUUAUUUCUGUUGC----CAUUUUCGCCGGCAAAGGAAACCUUGCCAAUU .((((......)))).(((((.....))))).....-----......................-(((.((((...........)))).----))).......(((((.(....).))))).... ( -18.10, z-score = -1.20, R) >droSim1.chrX 5818561 113 - 17042790 UACACUUUCACGUCUUUGUCCCUUCAGGAUACAUUU------CCCCCCCAUUUUCUUUCAUUC-AUGUUAACUGUUUAUUUCUGUUGC----CAUUUUCGCUGGCAAAGGAAACCUUGCCAAUU ................(((((.....))))).....------.....................-(((.((((...........)))).----)))......((((((.(....).))))))... ( -16.10, z-score = -0.75, R) >droGri2.scaffold_15203 10438196 101 - 11997470 UGCAUUUUAGAGUAGGUGUCCUCUCGUUACAGCUUU----CCACAUUUUGUUUUUUUUUAC---UUGCUUGCUGACUGACUUUGUUGA----UAUGGACAGCGGAGAGCAAA------------ .........(((.(((...))))))......(((((----((.......((........))---......((((.((...........----...)).)))))))))))...------------ ( -20.14, z-score = 0.54, R) >consensus UACACUUUCACGUCUAUGUCCCUUCAGGAUACAUUU______CCCCCCCAUUUUCUUUCAUCC_AUGCUAACUGUUUAUUUCUGUUGC____CAUUUUCGCCGGCGAAGGAAACCUUGCCAAUU ................(((((.....))))).......................................................................(((((.(....).))))).... ( -9.32 = -9.93 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:23:14 2011