Locus 13534

Sequence ID dm3.chrX
Location 7,260,733 – 7,260,836
Length 103
Max. P 0.507056
window18637

overview

Window 7

Location 7,260,733 – 7,260,836
Length 103
Sequences 4
Columns 107
Reading direction reverse
Mean pairwise identity 66.04
Shannon entropy 0.56682
G+C content 0.32543
Mean single sequence MFE -22.38
Consensus MFE -7.55
Energy contribution -7.67
Covariance contribution 0.12
Combinations/Pair 1.18
Mean z-score -1.77
Structure conservation index 0.34
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.02
SVM RNA-class probability 0.507056
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 7260733 103 - 22422827
CACAUCUAGAGUGUGAGUUGAAUUCGAAAAGAAUAUUCAAAUAUUCUUUAGAGCCAUGUAGAAAAUGUUAGCUUAG----GCUUAUCUAGUAAAAAAAAAACCUAAU
.....(((((((.((((((((.(((..(((((((((....))))))))).))).(((.......))))))))))).----))...)))))................. ( -20.00, z-score =  -2.12, R)
>droSim1.chrX 5797616 105 - 17042790
CACAUCUAGAGUGUGAGUUGAAUUCGAAAAGAAAACUCAAAUACUCUUUAGAGCCACGGGAAAAAUGGUGGCUUAGUUAAGCUUAUUUUGUAAAAAGGCAUAUUU--
.......((((((((((((...(((.....)))))))))..))))))...(((((((.(......).)))))))......((((...........))))......-- ( -24.50, z-score =  -1.92, R)
>droYak2.chrX 7682056 92 + 21770863
GCCCUCUAGAGUGUGAGUUGCAUUCGAAAAGAAAAUUCAAAUACAUUUUAGAGUUUUCUA-------------CAUUGGGCUUUUUUUUGUAGAAAACACUAUUU--
....(((((((((((..(((..(((.....)))....))).)))))))))))((((((((-------------((.............)))))))))).......-- ( -22.72, z-score =  -2.67, R)
>droEre2.scaffold_4690 16168740 105 - 18748788
GCCAACUAGAGUGUGAGUCGACUUCGAAAAGAAAAUUUAAAUACUUUUUAGAGCUUCAGAAAACUCGCUUAGCAAGUUGGACUUCUUCUGUAGAGAACAAAAUUU--
.((((((.(...((((((((....)))...(((..((((((.....))))))..)))......)))))....).))))))..(((((.....)))))........-- ( -22.30, z-score =  -0.39, R)
>consensus
CACAUCUAGAGUGUGAGUUGAAUUCGAAAAGAAAAUUCAAAUACUCUUUAGAGCCACGGAAAAAAUG_U_GCUUAGUUGGGCUUAUUUUGUAAAAAACAAAAUUU__
....(((((((.(((..((((.(((.....)))...)))).))).)))))))....................................................... ( -7.55 =  -7.67 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:23:12 2011