| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,490,281 – 10,490,368 |
| Length | 87 |
| Max. P | 0.616841 |
| Location | 10,490,281 – 10,490,368 |
|---|---|
| Length | 87 |
| Sequences | 6 |
| Columns | 88 |
| Reading direction | forward |
| Mean pairwise identity | 76.95 |
| Shannon entropy | 0.44947 |
| G+C content | 0.46311 |
| Mean single sequence MFE | -24.63 |
| Consensus MFE | -14.32 |
| Energy contribution | -16.43 |
| Covariance contribution | 2.11 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.616841 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10490281 87 + 23011544 UGAUCAGUUGACGAGAUACCCCUUAUAUGUAUGUUGAAUGGAGCAGCCAGCACACUGGUUAC-CAUAGUCGUGUGCUCCAUGCUCCGG ...........(((.((((.........)))).)))..(((((((...(((((((.(..((.-..))..))))))))...))))))). ( -26.60, z-score = -1.72, R) >droSim1.chr2L 10293608 87 + 22036055 UGAUCAGUUGACGAGAUACCACUUAUAUGUAUGUUGAAUGGAGCAGCCAGCACACUGGUUAC-CAUAUUCGUGUGCUCCAUGCUCCGG ...........(((.((((.........)))).)))..(((((((...(((((((..((...-...))..)))))))...))))))). ( -27.30, z-score = -2.04, R) >droSec1.super_3 5917666 87 + 7220098 UGAUCAGUUGACGAGAUACCACUUAUAUGUAUGUUGAAUGGAGCAGCCAGCACACUGGCUAC-CAUAUUCGUGUGCUCCAUGCUCCGG ...........(((.((((.........)))).)))..(((((((...((((((((((...)-)).....)))))))...))))))). ( -26.00, z-score = -1.48, R) >droEre2.scaffold_4929 11703602 86 - 26641161 UGAUCAGUUGACGAG-UACCCAUUAUAUGUAUGUUGAAUGGAGCAGACAGCACACUGGAUAC-CAUAUUCGUGUGCUCCAUGCUCCGG ...((((...(((.(-((.....))).)))...)))).(((((((...(((((((.(((((.-..))))))))))))...))))))). ( -27.30, z-score = -2.19, R) >droYak2.chr2L 6897298 86 + 22324452 UGAUCAGUUGACGAGGUACCCCUUAUAUGUAUGUUGAUUGGAGCAUCCAGCACAAUGGCUGC--ACACUCGUGUGCUCCAUGCUCCGG .((((((...((((((....))))....))...))))))(((((((..((((((..(.....--...)...))))))..))))))).. ( -26.60, z-score = -1.00, R) >droGri2.scaffold_15252 7490750 82 + 17193109 UGUUCUGGAGAGCAACUUCCACUAGC-CCUUUAUUGAAAUGGGGUCUUUGUAAAAUAUAUAUGUGUAUUUGUGCAUUUCAUGA----- (((((....)))))..........((-(((..........)))))...(((((((((((....))))))).))))........----- ( -14.00, z-score = 0.52, R) >consensus UGAUCAGUUGACGAGAUACCACUUAUAUGUAUGUUGAAUGGAGCAGCCAGCACACUGGAUAC_CAUAUUCGUGUGCUCCAUGCUCCGG ...........(((.((((.........)))).)))..(((((((...(((((((.(..((....))..))))))))...))))))). (-14.32 = -16.43 + 2.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:30:21 2011