| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,238,463 – 7,238,589 |
| Length | 126 |
| Max. P | 0.761539 |
| Location | 7,238,463 – 7,238,589 |
|---|---|
| Length | 126 |
| Sequences | 11 |
| Columns | 131 |
| Reading direction | forward |
| Mean pairwise identity | 76.23 |
| Shannon entropy | 0.49409 |
| G+C content | 0.35631 |
| Mean single sequence MFE | -19.39 |
| Consensus MFE | -10.43 |
| Energy contribution | -11.09 |
| Covariance contribution | 0.66 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.761539 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7238463 126 + 22422827 -CUUGA-UUUUUUUCGUGGUCCAUCCUCUUCCGUCCUC-UAUUUGCCAUUUCAACGUGUUUUAUCGCGUUUUAAGAGCAGUUUUUAAAAAUUAAAAGCACGUCCUAAGUCCACAUUUGGUCAA--CAGCUG -.((((-((......((((.(.................-....(((..((..((((((......))))))..))..)))(((((((.....))))))).........).))))....))))))--...... ( -22.10, z-score = -1.76, R) >droEre2.scaffold_4690 16144729 126 + 18748788 -CUUCA-UUUUUUUCGUGGUGCAUCCUCCUUCGUCCUC-UAUUUGCCAUUUCAACGUGUUUUAUCGCGUUUUAAGAGCAGUUUCUAAAAAUAAAAAGCACGUCCUAAGUCCACAUUUGGUCAA--CAGCUG -.....-........((.((((................-....(((..((..((((((......))))))..))..)))((((....)))).....)))).......(.(((....))).).)--)..... ( -17.50, z-score = -0.15, R) >droYak2.chrX 7656933 127 - 21770863 -CUUGAAUUUUUUCCGUGCUCCAACCUCCUCCGUCCUC-UAUUUGCCAUUUUAACGUGUUUUAUCGCGUUCUAAGAGCAGUUUUUAAAAAUUAAAAGCACGUCCUAAGUCCACAUUUGGUCAA--CAGCUG -.((((........(((((...................-...((((..((..((((((......))))))..))..)))).(((((.....))))))))))..((((((....))))))))))--...... ( -20.30, z-score = -1.30, R) >droSec1.super_24 448061 126 + 912625 -CUUGA-UUUUUUUCGUGGUCCACCCUCUUCCGUCCUC-UAUUUGCCAUUUCAACGUGUUUUAUCGCGUUUUAAGAGCAGUUUUUAAAAAUUAAAAGCACGUCCUAAGUCCACAUUUGGUCAA--CAGCUG -.((((-((......((((.(.................-....(((..((..((((((......))))))..))..)))(((((((.....))))))).........).))))....))))))--...... ( -22.10, z-score = -1.59, R) >droWil1.scaffold_180777 1183978 124 - 4753960 -----GUGUGUUUUCCUUCUAUCUUACCCUUUUCCCAC-UAUUUGCCAUUUCAACGUGUUUUAUCGCGUUUUAAAAGCAGUUUUUAAAAAUUAAAAGCACGUCCUAAGUCCACAUUUGGUCAA-ACAGCUG -----...(((((.((......((((............-....(((..((..((((((......))))))..))..)))(((((((.....)))))))......)))).........))..))-))).... ( -16.46, z-score = -1.00, R) >droPer1.super_14 638058 111 + 2168203 ------------------CUUAAUUUUUUUCUUUCUUUGUGCUCGUCAUUUCAACAUAUUUUAUCGCGUUUUAAAAGCAGUUUUUAAAAAUUAAAAUAACGUCCUAAGUCCACAUUUGGUCAA--CAGAUG ------------------.........................((((.........(((((((.....(((((((((...)))))))))..))))))).........(.(((....))).)..--..)))) ( -10.00, z-score = 0.36, R) >dp4.chrXL_group1e 11197107 111 + 12523060 ------------------CUUAAUUUUUUUCUUUCUUUGUGCUCGUCAUUUCAACAUAUUUUAUCGCGUUUUAAAAGCAGUUUUUAAAAAUUAAAAUAACGUCCUAAGUCCACAUUUGGUCAA--CAGAUG ------------------.........................((((.........(((((((.....(((((((((...)))))))))..))))))).........(.(((....))).)..--..)))) ( -10.00, z-score = 0.36, R) >droAna3.scaffold_13117 80111 127 + 5790199 UUUUUCGCUCUUUUGCUCACCCAUUCCUUCGUCCGUUC-UAUUU-UCAUUUUAACGUGUUUUAUCGCGUUUUAAGAGCAGUUUUUAAAAAUUAAAAGCACGUCCUAAGUCCCCAUUUGGUCAA--CAUCUG ......((......))..............(.((((((-(....-.......((((((......))))))...))))).(((((((.....)))))))...................)).)..--...... ( -16.84, z-score = -1.67, R) >droVir3.scaffold_12970 3399296 115 + 11907090 ---------------UUUUUUUGUGUGUCUCUUACAAC-UAUUUGCAGUUUCAACGUGUUUUAUCACGUUUUAAGAGCAGUUUUUAAAAAUUAAAAGCACGUCCUAAGUCCACAUUUGGUCAACACAGCUG ---------------.....(((((((.((((((.(((-(......))))..((((((......)))))).))))))).(((((((.....))))))).........(.(((....))).).))))))... ( -22.70, z-score = -1.65, R) >droMoj3.scaffold_6473 7852014 114 + 16943266 ----------------UUUUCUGUGUGUCUUUUACAAC-UAUUUGCUGCUUCAACGUGUUUUAUCACGUUUUAAAAGCAGUUUUUAAAAAUUAAAAGCACGUCCUAAGUCCACAUUUGGUCCACACAGAUG ----------------...(((((((((((((((....-.....(((((((.((((((......))))))....)))))))..........)))))).))(..((((((....))))))..)))))))).. ( -31.31, z-score = -4.89, R) >droGri2.scaffold_15203 1521937 119 - 11997470 -----------CUUUUUCCUUUUUGUGUCUUUUGCAAC-UAUUUGCAGUUUCGACGUGUUUUAUCACGUUUUAAAAGCAGUUUUUAAAUAUUAAAAGCACGUCCUAAGUCCACAUUUGGUCAACACAGCUG -----------...........((((((...((((((.-...))))))....((((((((((.......((((((((...)))))))).....))))))))))....(.(((....))).).))))))... ( -24.00, z-score = -2.35, R) >consensus ________U_UUUUCGUGCUCCAUCCUUCUCUUUCCUC_UAUUUGCCAUUUCAACGUGUUUUAUCGCGUUUUAAGAGCAGUUUUUAAAAAUUAAAAGCACGUCCUAAGUCCACAUUUGGUCAA__CAGCUG .....................................................(((((((((......(((((((((...)))))))))....))))))))).....(.(((....))).).......... (-10.43 = -11.09 + 0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:23:05 2011