| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,229,705 – 7,229,812 |
| Length | 107 |
| Max. P | 0.965898 |
| Location | 7,229,705 – 7,229,812 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 84.97 |
| Shannon entropy | 0.19739 |
| G+C content | 0.32634 |
| Mean single sequence MFE | -19.69 |
| Consensus MFE | -16.27 |
| Energy contribution | -16.60 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chrX 7229705 107 + 22422827 AGAUAGUAUGUAUGUAUGUAUAUGUAUGUAUAGAUAUGUUCCAUUAUCUUUAUAAACGGAUUAUGUUCAAUUUAUCUCGAGUUCACCGCCGCAUAAUCCGCUUUGGA (((((((....((((((.(((((....))))).))))))...)))))))...((((((((((((((.........(....).........)))))))))).)))).. ( -22.47, z-score = -0.87, R) >droSec1.super_24 439302 89 + 912625 ---------------ACAUAUGUAUAUGUAUAGAUAU---CCAUUAUCUUUAUAAACGGAUUAUGUUCAAUUUAUCUUGAGUUCACCGCCGCAUAAUCCGCUUUGGA ---------------...........((((.(((((.---....))))).))))..((((((((((((((......))))..........))))))))))....... ( -17.60, z-score = -1.56, R) >droSim1.chrX_random 2247210 92 + 5698898 ---------------ACAUAUGUAUAUGUAUAGAUAUGUUCCAUUAUCUUUAUAAACGGAUUAUGUUCAAUUUAUCUUGAGUUCACCGCCGCAUAAUCCGCUUUGGA ---------------((((((.(((....))).))))))((((((((....)))).((((((((((((((......))))..........))))))))))...)))) ( -19.00, z-score = -1.69, R) >consensus _______________ACAUAUGUAUAUGUAUAGAUAUGUUCCAUUAUCUUUAUAAACGGAUUAUGUUCAAUUUAUCUUGAGUUCACCGCCGCAUAAUCCGCUUUGGA ..........................((((.(((((........))))).))))..((((((((((((((......))))..........))))))))))....... (-16.27 = -16.60 + 0.33)
| Location | 7,229,705 – 7,229,812 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 84.97 |
| Shannon entropy | 0.19739 |
| G+C content | 0.32634 |
| Mean single sequence MFE | -19.47 |
| Consensus MFE | -18.12 |
| Energy contribution | -17.90 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.76 |
| SVM RNA-class probability | 0.965898 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7229705 107 - 22422827 UCCAAAGCGGAUUAUGCGGCGGUGAACUCGAGAUAAAUUGAACAUAAUCCGUUUAUAAAGAUAAUGGAACAUAUCUAUACAUACAUAUACAUACAUACAUACUAUCU ....((((((((((((...((((.............))))..))))))))))))....((((((((.....(((.((((......)))).)))....)))..))))) ( -18.52, z-score = -1.32, R) >droSec1.super_24 439302 89 - 912625 UCCAAAGCGGAUUAUGCGGCGGUGAACUCAAGAUAAAUUGAACAUAAUCCGUUUAUAAAGAUAAUGG---AUAUCUAUACAUAUACAUAUGU--------------- ....((((((((((((.....(....)((((......)))).))))))))))))....(((((....---.)))))..(((((....)))))--------------- ( -19.10, z-score = -1.92, R) >droSim1.chrX_random 2247210 92 - 5698898 UCCAAAGCGGAUUAUGCGGCGGUGAACUCAAGAUAAAUUGAACAUAAUCCGUUUAUAAAGAUAAUGGAACAUAUCUAUACAUAUACAUAUGU--------------- ((((((((((((((((.....(....)((((......)))).))))))))))))..........))))((((((.(((....))).))))))--------------- ( -20.80, z-score = -2.56, R) >consensus UCCAAAGCGGAUUAUGCGGCGGUGAACUCAAGAUAAAUUGAACAUAAUCCGUUUAUAAAGAUAAUGGAACAUAUCUAUACAUAUACAUAUGU_______________ ....((((((((((((.....(....)((((......)))).))))))))))))....(((((........)))))............................... (-18.12 = -17.90 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:23:03 2011