| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,201,625 – 7,201,718 |
| Length | 93 |
| Max. P | 0.888365 |
| Location | 7,201,625 – 7,201,718 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 87.35 |
| Shannon entropy | 0.22620 |
| G+C content | 0.56373 |
| Mean single sequence MFE | -30.14 |
| Consensus MFE | -22.89 |
| Energy contribution | -22.92 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.888365 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7201625 93 + 22422827 ----------UCCCGCUCGCACUUGCACUCCAAGCACGCACACAUGCAA--GCGCAGACACCUCGCGACACGAUUGUCGUCAGUUUGUCUGCAAUGCUCAGCUUC ----------....(((.(((((((((.................)))))--).(((((((.((.((((((....)))))).))..)))))))..)))..)))... ( -29.93, z-score = -2.25, R) >droSim1.chrX 5752650 93 + 17042790 ----------UCCCGCUCGCACUUGCACUCCAAGCACGCACACAUGCAA--GCGCAGACACCUCGCGACACGAUUGUCGUCAGUUUGUCUGCAAUGCUCAGCUUC ----------....(((.(((((((((.................)))))--).(((((((.((.((((((....)))))).))..)))))))..)))..)))... ( -29.93, z-score = -2.25, R) >droSec1.super_24 410525 93 + 912625 ----------UCCCGCUCGCACUUGCACUCCAAGCACGCACACAUGCAA--GCGCAGACACCUCGCGACACGAUUGUCGUCAGUUUGUCUGCAAUGCUCAGCUUC ----------....(((.(((((((((.................)))))--).(((((((.((.((((((....)))))).))..)))))))..)))..)))... ( -29.93, z-score = -2.25, R) >droYak2.chrX 7615830 93 - 21770863 ----------UCCCGCUCGCACUUGCACUCCAAGUACGCACACAUGCAA--GCGCAGACACCUCGCGACACGAUUGUCGUCAGUUUGUCUGCAAUGCUCAGCUUC ----------....(((.(((((((((.................)))))--).(((((((.((.((((((....)))))).))..)))))))..)))..)))... ( -29.93, z-score = -2.39, R) >droEre2.scaffold_4690 16106196 93 + 18748788 ----------UCCCGCUCGCACUUGCACUCCAAGUACGCACACAUGCAA--GCGCAGACACCUCGCGACACGAUUGUCGUCAGUUUGUCUGCAGUGCUCAGCUUC ----------....(((.(((((.((((.....))..(((....)))..--))(((((((.((.((((((....)))))).))..))))))))))))..)))... ( -32.50, z-score = -2.65, R) >droPer1.super_14 595594 103 + 2168203 UCUCUUACACAAAUGCACACGAGUGCACACCGA-UACACACUCAUACAGUGGCGCAGACACCUCGCCG-ACGAUUGUCGUCAGUUUGUCUGCAACGCUCAGCGCC ..............((....(((((........-....)))))....((((..(((((((....((.(-(((.....)))).)).)))))))..))))..))... ( -28.60, z-score = -1.15, R) >consensus __________UCCCGCUCGCACUUGCACUCCAAGCACGCACACAUGCAA__GCGCAGACACCUCGCGACACGAUUGUCGUCAGUUUGUCUGCAAUGCUCAGCUUC ..............(((.(((............(((........)))......(((((((.((.((((((....)))))).))..)))))))..)))..)))... (-22.89 = -22.92 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:23:02 2011