| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,191,891 – 7,191,987 |
| Length | 96 |
| Max. P | 0.869686 |
| Location | 7,191,891 – 7,191,987 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 81.43 |
| Shannon entropy | 0.29207 |
| G+C content | 0.42301 |
| Mean single sequence MFE | -22.62 |
| Consensus MFE | -18.40 |
| Energy contribution | -18.00 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.869686 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7191891 96 + 22422827 ------------UCUUUUCUCACAUCAGU--UUGAUCGACAAUCGACGAUCGAUG-------GCUGUGUGA-AAACAAGUUUCGUAACUAUGUAAAUUAACCUCCAUACAGCCAAGCC ------------.................--(((((((........)))))))((-------((((((((.-.....((((((((....))).)))))......)))))))))).... ( -23.80, z-score = -2.74, R) >droSim1.chrX 5742899 93 + 17042790 ------------UCUUCUCUCACAUCACU--UUGAUCGACAAUCGACGAUCGAUGG-----GGCUGUGUGA-AAACAAGUUUCGUAACUAUGUAAAUUAACCUCCAUACGGCC----- ------------..........((((...--(((.(((.....))))))..)))).-----(((((((((.-.....((((((((....))).)))))......)))))))))----- ( -21.10, z-score = -1.40, R) >droSec1.super_24 400837 93 + 912625 ------------UCUUCUCUCACGUCACU--UUGAUCGACAAUCGACGAUCGAUGG-----GGCUGUGUGA-AAACAAGUUUCGUAACUAUGUAAAUUAACCUCCAUACGGCC----- ------------...............(.--(((((((........))))))).).-----(((((((((.-.....((((((((....))).)))))......)))))))))----- ( -20.80, z-score = -0.87, R) >droYak2.chrX 7605673 113 - 21770863 UCUUCUUUCACCUCAGCUUUCAGCUUUCAGCUUGAUCGACAAUCAACGAUCGACGAUGGAUGGCUGUGUGAGAAACAAGUUUCGUAACUAUGUAAAUUAACCUCCAUACAGCG----- ........(((((((((.....)))....(.(((((((........)))))))))).)).))((((((((.((....((((((((....))).)))))....)))))))))).----- ( -25.90, z-score = -1.18, R) >droEre2.scaffold_4690 16096222 92 + 18748788 ------------UCUUCUUUCACCUCACAGAUUGAUCGACAAUCGACGAUCGAUG-------GCUGUGUGA-AAACAAGUUUCGUAACUAUGUAAAUUAACCUCCACACAGC------ ------------.............((..(((((.(((.....))))))))..))-------((((((((.-.....((((((((....))).)))))......))))))))------ ( -21.50, z-score = -2.08, R) >consensus ____________UCUUCUCUCACAUCACU__UUGAUCGACAAUCGACGAUCGAUG______GGCUGUGUGA_AAACAAGUUUCGUAACUAUGUAAAUUAACCUCCAUACAGCC_____ ...............................(((((((........))))))).........((((((((.......((((((((....))).)))))......))))))))...... (-18.40 = -18.00 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:22:58 2011