| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,178,850 – 7,178,964 |
| Length | 114 |
| Max. P | 0.601043 |
| Location | 7,178,850 – 7,178,964 |
|---|---|
| Length | 114 |
| Sequences | 7 |
| Columns | 129 |
| Reading direction | forward |
| Mean pairwise identity | 59.61 |
| Shannon entropy | 0.76766 |
| G+C content | 0.52723 |
| Mean single sequence MFE | -35.59 |
| Consensus MFE | -13.16 |
| Energy contribution | -13.17 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.75 |
| Mean z-score | -0.92 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.601043 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7178850 114 + 22422827 CGCUUUGGACAAGGCUC----AGACGAUUAAAAGCCACCACGUCCUGGUGGGAGGGGAAUGUCACCGGGGCAAAACUAGCGAAGCAAGUCGAUAUUUUAUUGGGGGCUUCUGGCGACG----------- .(((((....)))))..----............((((....((((((((((.(......).)))))))))).........(((((...((((((...))))))..)))))))))....----------- ( -37.10, z-score = -1.22, R) >droWil1.scaffold_180777 1887291 101 + 4753960 ------UAUCAAAUGUC--------AUCCUGUUUCGAUUAACUUCCGCUAACCACACCGAAGUGAAAGAGAUAGAUUGGGCAUACACAUACAUAUUUUGGUGGCGUAUGAUAAUA-------------- ------(((((.(((((--------((((((((((.....(((((.(.........).)))))....)))))))..((......))............)))))))).)))))...-------------- ( -23.50, z-score = -1.52, R) >droSim1.chrX 5734668 112 + 17042790 CGCUUUGGACAAGGCUC----AGACGGUUAAAAGCCACCACGUCCUGGUGGG-GGGGAAUGUCACCGGGGCAAAACUAGCGAAGCAAGUCGAUAUUUUAUUGGGGGCUUCUGGC-ACG----------- .(((((....)))))..----...((((((.(((((.(((.((((((((((.-(.....).))))))))))........(((......))).........))).))))).))))-.))----------- ( -37.70, z-score = -1.29, R) >droSec1.super_24 387984 112 + 912625 CGCUUUGGACAAGGCUC----AGACGGUUAAAAGCUACCACGUCCUGGUGG--GGGGAAUGUCACCGGGGCAAAACUAGCGAAGCAAGUCGAUAUUUUAUUGGGGGCUUCUGGCGACG----------- ((((.........(((.----((..(((........)))..((((((((((--.(....).))))))))))....)))))(((((...((((((...))))))..))))).))))...----------- ( -37.10, z-score = -1.40, R) >droYak2.chrX 7592102 127 - 21770863 CGCCUUGGACAAGUCUCGACAAGACGACAAAGAGCCACCGCGUCCUGGUGG--GGGGAAUGUAACCGGGGCAAAACUAGUGGAGCAAGUCGAUAUUUAGUUGGAGGCUUCUGGUUUCUGGCUUCUGGCG ((((........(((((.....)).)))...((((((....((((((((..--..........)))))))).(((((((..((((...(((((.....)))))..))))))))))).))))))..)))) ( -42.40, z-score = -0.28, R) >droEre2.scaffold_4690 16082797 112 + 18748788 CGCCUUGGACAAGUCUC----AGAGGACUAAAACCCGCCACGUCCUGGUGG--GGGAAAUGCAACCGGGGCAAAACUAGUGAAGCAAGUCGAUAUUUCGUUGGAGGCUUCUGACGGCG----------- .(((((((...(((((.----...)))))....(((((((.....))))))--)..........))))))).........(((((...(((((.....)))))..)))))........----------- ( -38.70, z-score = -1.14, R) >droAna3.scaffold_13117 2955192 111 + 5790199 CACCCUGGACAAACAUCC-UGGAGCAUCUCGGCGGGAUGGGGUGUAACCGA--GAUAAAGAGAGCUGGAGUGGU----GUGGAGCAGGUCGAUCAUUUGUUGUGGGUUGUGGGUGGCG----------- (((((..(((..((((((-(..(((.((((....(..(.((......)).)--..)...)))))))..)).)))----))(.(((((((.....))))))).)..)))..)))))...----------- ( -32.60, z-score = 0.39, R) >consensus CGCCUUGGACAAGGCUC____AGACGACUAAAAGCCACCACGUCCUGGUGG__GGGGAAUGUAACCGGGGCAAAACUAGCGAAGCAAGUCGAUAUUUUGUUGGGGGCUUCUGGCGACG___________ .(((((((................(........)((.((((......))))...))........))))))).........(((((...(((((.....)))))..)))))................... (-13.16 = -13.17 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:22:57 2011