| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,172,717 – 7,172,845 |
| Length | 128 |
| Max. P | 0.849650 |
| Location | 7,172,717 – 7,172,845 |
|---|---|
| Length | 128 |
| Sequences | 7 |
| Columns | 129 |
| Reading direction | reverse |
| Mean pairwise identity | 78.69 |
| Shannon entropy | 0.43072 |
| G+C content | 0.49481 |
| Mean single sequence MFE | -33.30 |
| Consensus MFE | -15.74 |
| Energy contribution | -15.92 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.849650 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7172717 128 - 22422827 CAACUCGACCCUCACGUACGAACUUUGGCCAUAACAACAACUGUGGCCAUUACGAAGCCAAGCCAUGUGAUGCGAAAUCACACACACACACAUGUGCACUCGCAGAAAAAGCGGGUGCUUGUGCUAUU- ....(((((......)).)))....((((((((........))))))))......((((((((..((((((.....))))))((((......)))).((((((.......))))))))))).)))...- ( -38.80, z-score = -2.55, R) >droAna3.scaffold_13117 2948605 122 - 5790199 CAACUCGACCCUCACGUACGAACUUUGGCCAUAACAACAACUGUGGCCAUUACGAAGCCAAAGCAUGUGAUACGAA----CACACACACAUGUGAGGACACUGCGAGAAACUAGAGGGUUUUCUUU--- ......(((((((.((((.......((((((((........)))))))).))))..(((...(((((((.......----......)))))))..)).)..............)))))))......--- ( -34.12, z-score = -3.22, R) >droEre2.scaffold_4690 16076654 126 - 18748788 CAACUCGACCCUCACGUACGAACUUUGGCCAUAACAACAACUGUGGCCAUUACGAAGCCAAGCCAUGUGAUGCGAAAU--CACACACACACAUGUGCACUCGCCGAAAAAGCGGGUGCUUGUGCUAUC- ....(((((......)).)))....((((((((........))))))))......((((((((..((((((.....))--))))((((....)))).((((((.......))))))))))).)))...- ( -38.10, z-score = -2.41, R) >droYak2.chrX 7585307 128 + 21770863 CAACUCGACCCUCACGUACGAACUUUGGCCAUAACAACAACUGUGGCCAUUACGAAGCCAAGCCAUGUGAUGCGAAAUCACACAAGCACACAUGUACACUCGCCGAAAAAGCGGCUGCUUGUGCUGCC- ....(((((......)).)))....((((((((........))))))))......((((((((((((((.(((............))))))))).......((((......)))).))))).)))...- ( -39.90, z-score = -3.08, R) >droSec1.super_24 382032 113 - 912625 CAACUCGACCCUCACGUACGAACUUUGGCCAUAACAACAACUGUGGCCAUUACGAAGCCAAGCCAUGUGAUGCGAAAU--CACACACACACAUGUGCACUCGCAAAAAAAGCAUU-------------- ...........((((((.((.....((((((((........))))))))...))..((...)).))))))(((((...--((((........))))...)))))...........-------------- ( -25.60, z-score = -1.78, R) >droSim1.chrX 5728727 113 - 17042790 CAACUCGACCCUCACGUACGAACUUUGGCCAUAACAACAACUGUGGCCAUUACGAAGCCAAGCCAUGUGAUGCGAAAU--CACACACACACAUGUGCACUCGCAAAAAAAGCAUU-------------- ...........((((((.((.....((((((((........))))))))...))..((...)).))))))(((((...--((((........))))...)))))...........-------------- ( -25.60, z-score = -1.78, R) >droVir3.scaffold_12932 1150645 129 - 2102469 CGGCUCGACCCUCACGUACGAACUUUUGCCAUAACAACAACUGUGGCCAUUACCUAUCCGGAGCAUGUGAGAGACACACUCACUCACACACACACACACGCGAGUCCUGCCUGUUGGUCCUUGCGCUAC (((.(((((......)).)))......((((((........))))))..........))).(((.((((((.((.....)).))))))...........(((((....(((....))).)))))))).. ( -31.00, z-score = -0.51, R) >consensus CAACUCGACCCUCACGUACGAACUUUGGCCAUAACAACAACUGUGGCCAUUACGAAGCCAAGCCAUGUGAUGCGAAAU__CACACACACACAUGUGCACUCGCAGAAAAAGCGGUUGCUUGUGCU____ ....(((((......)).)))....((((((((........))))))))..............((((((...................))))))................................... (-15.74 = -15.92 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:22:56 2011