| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,154,602 – 7,154,701 |
| Length | 99 |
| Max. P | 0.965203 |
| Location | 7,154,602 – 7,154,701 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 76.49 |
| Shannon entropy | 0.31702 |
| G+C content | 0.35035 |
| Mean single sequence MFE | -21.13 |
| Consensus MFE | -12.37 |
| Energy contribution | -12.82 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.74 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.75 |
| SVM RNA-class probability | 0.965203 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7154602 99 + 22422827 UACCAUCACUUGGUUGUGUUCGAAUUUAAAGCCAAGGUUGGAGAACGACUUAAAGAACCUUAUUAUAUUAUUUCUUCUAAGUUUCAUUCUUCUACAUUC ........(((((((.((........)).)))))))((.((((((.(((((((((((...((......)).))))).))))))...)))))).)).... ( -19.80, z-score = -1.79, R) >droSec1.super_24 364205 75 + 912625 UACCAUCACUUGGCU-----UGAAUUUAAAGCUUAGGUUGGAGAACGA------------UAUU-------UUCUUCUAGGUAUCGUUCUUCUACAUUC ........((.((((-----(.......))))).))((.(((((((((------------((((-------(......)))))))))))))).)).... ( -24.50, z-score = -5.17, R) >droSim1.chrX 5711263 87 + 17042790 UACCAUCACUUGGUU-----UGAAUUUAAAGCUGUGGUUGGAGAACGACUUUAAGAGCCUUAUU-------UUCUUCUAGGUAUCGUUCUUCUACAUUC ......(((..((((-----(.......))))))))((.(((((((((((..(((((.......-------)))))..))...))))))))).)).... ( -19.10, z-score = -1.25, R) >consensus UACCAUCACUUGGUU_____UGAAUUUAAAGCUAAGGUUGGAGAACGACUU_AAGA_CCUUAUU_______UUCUUCUAGGUAUCGUUCUUCUACAUUC ........(((((((..............)))))))((.(((((((((...................................))))))))).)).... (-12.37 = -12.82 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:22:55 2011