| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,145,355 – 7,145,449 |
| Length | 94 |
| Max. P | 0.867368 |
| Location | 7,145,355 – 7,145,449 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 64.76 |
| Shannon entropy | 0.57666 |
| G+C content | 0.60796 |
| Mean single sequence MFE | -35.26 |
| Consensus MFE | -12.28 |
| Energy contribution | -11.88 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.867368 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7145355 94 + 22422827 CGGCAGCGGGUGGAUUUCUGGAUUUACGGCU--CGAUGGUCCCCCUGUCCGUAUGUCCAUGUGACCGUAUAUC-CCUUUUGUCCGCGCAUCCCAAUG ..((.(((((..((.....((((.(((((.(--((((((.(.............).)))).)))))))).)))-)..))..)))))))......... ( -29.82, z-score = -0.94, R) >droSec1.super_24 354560 93 + 912625 CGGCAGCGGGUGGAUUUCUGGAUUUACGGCU--CGAUGGUCCGC-UGUCCGUAUGUCCAUGUGGCCGUAUAUC-CCUUUUGUCCGCGCAUCCCAGUG ..((.(((((..((.....((((.(((((((--..((((.(.((-.....))..).))))..))))))).)))-)..))..)))))))......... ( -34.50, z-score = -1.55, R) >droSim1.chrX 5701672 85 + 17042790 CGGCAGCGGGUGGAU--------UUACGGCU--CGAUGGUCCGC-UGUCCGUAUGUCCAUGUGGCCGUAUAUC-CCUUUUGUCCGCGCAUCCCAGUG ..((.(((((.((((--------.(((((((--..((((.(.((-.....))..).))))..))))))).)))-)......)))))))......... ( -29.00, z-score = -0.56, R) >droMoj3.scaffold_6473 14925612 81 + 16943266 ---CGGCGGGUGGAU--------UUACGGCUGUGGAUGGUCGACUGGCAGCCAAAGGCCGUCGACGGUCGAUGGUCGUCUGUCCGCCCGAUG----- ---...(((((((((--------..((((((((.(((.((((((.(((........))))))))).))).))))))))..)))))))))...----- ( -50.00, z-score = -5.81, R) >droVir3.scaffold_12932 1109241 78 + 2102469 CGGCAGCGGGUGGAU--------UUACGGCU--GGAUGGUCGGUUGGCAGCCAAAGGCCGUCGACAGUCGACAGUCGGCUGUCCGAUG--------- ((.((((.(......--------...).)))--)(((((((..((((...)))).)))))))((((((((.....))))))))))...--------- ( -33.00, z-score = -1.82, R) >consensus CGGCAGCGGGUGGAU________UUACGGCU__CGAUGGUCCGC_UGUCCGUAUGUCCAUGUGACCGUAUAUC_CCUUUUGUCCGCGCAUCCCA_UG .....(((((..((.............((......((((((....((..........))...))))))......)).))..)))))........... (-12.28 = -11.88 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:22:54 2011