| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,106,134 – 7,106,228 |
| Length | 94 |
| Max. P | 0.734924 |
| Location | 7,106,134 – 7,106,228 |
|---|---|
| Length | 94 |
| Sequences | 11 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 72.80 |
| Shannon entropy | 0.52855 |
| G+C content | 0.49046 |
| Mean single sequence MFE | -27.84 |
| Consensus MFE | -17.80 |
| Energy contribution | -17.20 |
| Covariance contribution | -0.60 |
| Combinations/Pair | 1.38 |
| Mean z-score | -0.85 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.734924 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7106134 94 + 22422827 UGUGGCAUGUCCAACUUGCGGCAAGUGCGUGUAAAUGCAAAUGUUGCCAAUGCUCAGCCGAAAAUUGGAUUGACAGCGAGAAGGAGGUGGAGAA---------------- .....(((.(((..((((((((((.(((((....)))))....)))))..((.((((((((...)))).)))))))))))..))).))).....---------------- ( -33.00, z-score = -2.65, R) >droPer1.super_14 472685 110 + 2168203 UGUGGCAUGUCCGACUUGUGGCAAGUGCGUGUAAAUGCAAAUGUUGUCAAUGCGCAGCCGAAAAUUGGAUUGGUUUGUAUUCUGUGUGCUGUGGCGCAGAGAAGGGAAGA ....(((.((((((.((.((((..((((((......((....)).....)))))).)))).)).)))))).....))).((((.(((((....))))).))))....... ( -32.30, z-score = -0.43, R) >dp4.chrXL_group1e 11035624 110 + 12523060 UGUGGCAUGUCCGACUUGUGGCAAGUGCGUGUAAAUGCAAAUGUUGUCAAUGCGCAGCCGAAAAUUGGAUUGGUUUGUAUUCUGUGUGCUGUGGCGCAUAGAGGCGAAGA .....((.((((((.((.((((..((((((......((....)).....)))))).)))).)).)))))))).(((((.((((((((((....))))))))))))))).. ( -35.90, z-score = -1.12, R) >droAna3.scaffold_13117 2873840 78 + 5790199 UGUGGCAUGUCCAACUUGUGGCAAGUGCGUGUAAAUGCAAAUUUUGUCAAUGCUCAGCCGAAAAUUGGAUUGCCGGAG-------------------------------- (.(((((.((((((.((.((((...(((((....))))).....((........)))))).)).))))))))))).).-------------------------------- ( -23.80, z-score = -1.49, R) >droEre2.scaffold_4690 16007570 95 + 18748788 UGCGGCAUGUCCAACUUGCGGCAAGUGCGUGUAAAUGCAAAUGUUGCCAAUGCUCAGCCGAAAAUUGGAUUGACGGCGGGAAGGGGGCGGGAGAA--------------- ..(.((...(((..((((((((((.(((((....)))))....)))))..((.((((((((...)))).)))))))))))..))).)).).....--------------- ( -29.00, z-score = 0.19, R) >droYak2.chrX 7513728 96 - 21770863 UGUGGCAUGUCCAACUUGCGGCAAGUGCGUGUAAAUGCAAAUGUUUCCAAUGCUCAGCCGAAAAUUGGAUUGACAGCGACAAGGAGGCGAGGAGAA-------------- (((.((.((((........((((..(((((....)))))..))))((((((..((....))..))))))..)))))).)))...............-------------- ( -24.60, z-score = 0.50, R) >droSec1.super_24 315738 94 + 912625 UGUGGCAUGUCCAACUUGCGGCAAGUGCGUGUAAAUGCAAAUGUUGCCAAUGCUCAGUCGAAAAUUGGAUUGACAGCGAGAAGGAGGCGGAGAA---------------- ....((...(((..((((((((((.(((((....)))))....)))))..((.((((((........)))))))))))))..))).))......---------------- ( -31.70, z-score = -2.14, R) >droSim1.chrX 5663233 94 + 17042790 UGUGGCAUGUCCAACUUGCGGCAAGUGCGUGUAAAUGCAAAUGUUGCCAAUGCUCAGCCGAAAAUUGGAUUGACAGCGAGAAGGAGGCGGAGAA---------------- ....((...(((..((((((((((.(((((....)))))....)))))..((.((((((((...)))).)))))))))))..))).))......---------------- ( -30.40, z-score = -1.39, R) >droVir3.scaffold_12932 1052604 76 + 2102469 UGCGGCAUGUCCGACCUGCGGCAAGUGCGUGUAAAUGCAAAUGUUGUCAAUGUGCAGCCGAAAAUUGAAUUGGGAA---------------------------------- ..((((.((..((....((((((..(((((....)))))..))))))...))..))))))................---------------------------------- ( -21.60, z-score = -0.24, R) >droMoj3.scaffold_6473 14869780 76 + 16943266 UGCGGCAUGUCCGACCUGCGGCAAGUGCGUGUAAAUGCAAAUGCUGUCAGUGUGUAGCCAAAAAUUGAAUUGGGAA---------------------------------- ..(((.....)))((((((((((..(((((....)))))..))))).))).))....((((........))))...---------------------------------- ( -22.10, z-score = -0.59, R) >droGri2.scaffold_14853 5472341 77 - 10151454 UGCGGCAUGCCUGACCUGCGGCAAGUGCGUGUAAAUGCAAAUGUUGUCAAUGUGCAGCCGAAAAUUGAAAUUGGGUA--------------------------------- ..((((.(((.......((((((..(((((....)))))..))))))......))))))).................--------------------------------- ( -21.82, z-score = -0.03, R) >consensus UGUGGCAUGUCCAACUUGCGGCAAGUGCGUGUAAAUGCAAAUGUUGUCAAUGCUCAGCCGAAAAUUGGAUUGACAGCGA_AAGG_GG_G_____________________ ..((((.((..((..((((((((..(((((....)))))..))))).)))))..)))))).................................................. (-17.80 = -17.20 + -0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:22:52 2011