| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,089,042 – 7,089,137 |
| Length | 95 |
| Max. P | 0.815486 |
| Location | 7,089,042 – 7,089,137 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 94.21 |
| Shannon entropy | 0.10091 |
| G+C content | 0.54105 |
| Mean single sequence MFE | -33.58 |
| Consensus MFE | -28.22 |
| Energy contribution | -28.82 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.815486 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7089042 95 - 22422827 CACUUAUCGCUUGAGCCAACUAAUGAGCCGACGAGCUUGCAACUUGCAACAUGUUGUAAGCACUCGGAGAUCCUCAAAGGUCACGGUGGGCGGAG ......(((((...(((..........((((.(.(((((((((.........))))))))).))))).((((......))))..))).))))).. ( -31.00, z-score = -1.67, R) >droEre2.scaffold_4690 15990100 95 - 18748788 CACUUAUCGCAUGAGCCAACAGAUGAGCCGACGAGCUUGCAACUUGCAACAUGUUGUAAGCUCUCGGAGAUCCUCAAAGGUCACGGCGGCUGGGG ..((((((((....(((....((.((.((((.(((((((((((.........)))))))))))))))...)).))...)))....)))).)))). ( -35.60, z-score = -2.57, R) >droYak2.chrX 7495315 95 + 21770863 CUCUUAUCGCAUGAGCCAACCGAUGGGCCGACGAGCUUGCAACUUGCAACAUGUUGUAAGCUCUCGGAGAUCCUCAAAGGUCACGGUGGGUGGGG ..((((((((....))..((((.....((((.(((((((((((.........))))))))))))))).((((......)))).)))).)))))). ( -36.50, z-score = -2.29, R) >droSec1.super_24 298737 95 - 912625 CACUUAUCGCUUGAGCCAACUGAUGAGCCGACGAGCUUGCAACUUGCAACAUGUUGUAAGCACUCGGAGAUCCUCAAAGGUCACGAUGGGCGGGG (.(((((((..(((.((...(((.((.((((.(.(((((((((.........))))))))).)))))...)).)))..)))))))))))).)... ( -32.40, z-score = -1.96, R) >droSim1.chrX 5645811 95 - 17042790 CACUUAUCGCUUGAGCCAACUGAUGAGCCGACGAGCUUGCAACUUGCAACAUGUUGUAAGCACUCGGAGAUCCUCAAAGGUCACGAUGGGCGGGG (.(((((((..(((.((...(((.((.((((.(.(((((((((.........))))))))).)))))...)).)))..)))))))))))).)... ( -32.40, z-score = -1.96, R) >consensus CACUUAUCGCUUGAGCCAACUGAUGAGCCGACGAGCUUGCAACUUGCAACAUGUUGUAAGCACUCGGAGAUCCUCAAAGGUCACGGUGGGCGGGG (.(((((((..(((.((...(((.((.((((.(.(((((((((.........))))))))).)))))...)).)))..)))))))))))).)... (-28.22 = -28.82 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:22:51 2011