| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,087,389 – 7,087,489 |
| Length | 100 |
| Max. P | 0.955215 |
| Location | 7,087,389 – 7,087,489 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 94.20 |
| Shannon entropy | 0.09098 |
| G+C content | 0.53834 |
| Mean single sequence MFE | -29.44 |
| Consensus MFE | -29.00 |
| Energy contribution | -28.88 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.61 |
| SVM RNA-class probability | 0.955215 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7087389 100 + 22422827 AUGCAAUUGCGAAGGUUCCUCUCAAGCCGCGAAUCGCAAGUCUGACAAAUUCGCACUCGCCUUUCGGAUUCGCGGGUAAUUGCGCUACUCUCCAACCCCC------- ..((((((((((((....)).))...(((((((((((.(((.(((.....))).))).))......))))))))))))))))).................------- ( -30.30, z-score = -2.21, R) >droSim1.chrX 5644173 100 + 17042790 AUGCAAUUGCGAAGGUUCCUCUCAAGCCGCGAAUCGCAAGUCUGACAAAUUCGCACUCGCCUUUCGGAUUCGCGGGUAAUUGCGCUACUCUCCAACCCCC------- ..((((((((((((....)).))...(((((((((((.(((.(((.....))).))).))......))))))))))))))))).................------- ( -30.30, z-score = -2.21, R) >droSec1.super_24 297098 100 + 912625 AUGCAAUUGCGAAGGUUCCUCUCAAGCCGCGAGUCGCAAGUCUGACAAAUUCGCACUCGCCUUUCGGAUUCGCGGGUAAUUGCGCUACUCUCCAACCCCC------- ..((((((((((((....)).))...(((((((((((.(((.(((.....))).))).))......))))))))))))))))).................------- ( -30.30, z-score = -1.81, R) >droEre2.scaffold_4690 15988227 107 + 18748788 AUGCAAUUGCGAAGGUUCCUCUCAAGUCGCGAAUAGCAAGUCUGACAAAUUCGCACUCGCCUUUCGGAUUCGCGGGUAAUUGCGCGACUCUCCAACCCUCCCUUCUC ..((....))(((((.........(((((((((..((.(((.(((.....))).))).))..)))......((((....))))))))))...........))))).. ( -26.85, z-score = -0.65, R) >consensus AUGCAAUUGCGAAGGUUCCUCUCAAGCCGCGAAUCGCAAGUCUGACAAAUUCGCACUCGCCUUUCGGAUUCGCGGGUAAUUGCGCUACUCUCCAACCCCC_______ ..((((((((((((....)).))...(((((((((((.(((.(((.....))).))).))......)))))))))))))))))........................ (-29.00 = -28.88 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:22:50 2011