| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,084,507 – 7,084,599 |
| Length | 92 |
| Max. P | 0.837035 |
| Location | 7,084,507 – 7,084,599 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 72.57 |
| Shannon entropy | 0.52830 |
| G+C content | 0.45865 |
| Mean single sequence MFE | -23.28 |
| Consensus MFE | -12.66 |
| Energy contribution | -14.42 |
| Covariance contribution | 1.76 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.837035 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7084507 92 + 22422827 CUAGGACAUCGCGGCCAGUCAGGAGAUUUUUUCAAGUAGGUUCAAGUGCUCGCUGCACUUGUCCUGGAAU--UUCAAUUAACCA-UUUAACCAAA ((((((((..(((((.(((.....(((((........))))).....))).)))))...))))))))...--............-.......... ( -22.90, z-score = -1.37, R) >droSim1.chrX 5641470 93 + 17042790 CUAGGACAUCGCGGCCAGUCAGGAUAUUUUCUCAAGUAGGCUCAAGUACUCAUUGCACUUGUCCUGGAAU--UUCAAUUAACCGAUUCACCCCAA ((((((((..(((((((.(..(((.....)))..).).))))...(....)...))...))))))))...--....................... ( -17.80, z-score = -0.10, R) >droSec1.super_24 294315 93 + 912625 CUAGGACAUCGCGGCCAGUCAGGAUAUUUUCUCAAGUAGGCUCAAGUGCUCAUUGCACUUGUCCUGGAAU--UUCAAUUAACCGAUUUACCCAAA (((((((.....(((((.(..(((.....)))..).).)))).((((((.....)))))))))))))...--....................... ( -24.40, z-score = -2.03, R) >droYak2.chrX 7490005 90 - 21770863 CCAGGACAUCGCGGCCCGUCAGGAUACUUUC--AAGUAGGCUCAAGUGCUCAUUGCACUUGUCCUGGAAU--UUCAAUUAACUA-UUUUCCCAAA (((((((.....((((..(..(((....)))--..)..)))).((((((.....)))))))))))))...--............-.......... ( -27.10, z-score = -3.24, R) >droEre2.scaffold_4690 15985278 90 + 18748788 CUAGGACAUCGCGGCCAGUCAGGAUACUUUC--AAGUGGGCUCAAGUGCUCAUUGCACUUGUCCUGGAAU--UUCAAUUAACUG-UUUUCCCAAA (((((((.....((((...(..((.....))--..)..)))).((((((.....)))))))))))))...--............-.......... ( -24.70, z-score = -1.52, R) >droAna3.scaffold_13117 2853640 74 + 5790199 -----------------UCCAGAGAGGACCAACAACUCAAGUGGAGGG---AAUGCACUUGUCCUGGACUCUUUCGAAGGGUUAUCUGGUCCCA- -----------------......(.((((((.((...((((((.(...---..).))))))...))((((((.....))))))...))))))).- ( -22.80, z-score = 0.02, R) >consensus CUAGGACAUCGCGGCCAGUCAGGAUAUUUUCUCAAGUAGGCUCAAGUGCUCAUUGCACUUGUCCUGGAAU__UUCAAUUAACCA_UUUACCCAAA (((((((.....((((......((.....)).......)))).((((((.....)))))))))))))............................ (-12.66 = -14.42 + 1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:22:49 2011