| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,080,665 – 7,080,722 |
| Length | 57 |
| Max. P | 0.636785 |
| Location | 7,080,665 – 7,080,722 |
|---|---|
| Length | 57 |
| Sequences | 5 |
| Columns | 61 |
| Reading direction | forward |
| Mean pairwise identity | 85.67 |
| Shannon entropy | 0.25022 |
| G+C content | 0.31460 |
| Mean single sequence MFE | -9.32 |
| Consensus MFE | -5.04 |
| Energy contribution | -5.04 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.636785 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7080665 57 + 22422827 AAAAAAUAAGAUCAUUUAUAACAAAUGUACAUAUUUCUCCAAGUGA----AGCUCCACUUG ...(((((....(((((.....)))))....)))))...((((((.----.....)))))) ( -7.30, z-score = -2.12, R) >droSim1.chrX 5636628 57 + 17042790 AAAAAAUAAGAUCAUUUAUAACAAAUGUACAUAUUUCUCCAAGUGA----AGCUCCACUUG ...(((((....(((((.....)))))....)))))...((((((.----.....)))))) ( -7.30, z-score = -2.12, R) >droSec1.super_24 290408 57 + 912625 AAAAAAUAAGAUCAUUUAUAACAAAUGUACAUAUUUCUCCAAGUGA----AGCUCCACUUG ...(((((....(((((.....)))))....)))))...((((((.----.....)))))) ( -7.30, z-score = -2.12, R) >droYak2.chrX 7486445 57 - 21770863 AAAAAAAGAGAUCAUUUAUAUGAAAUGUACAUGUUUCUCCAAGUGA----AGCUCCACUUG .......((((.(((.(((((...))))).)))..))))((((((.----.....)))))) ( -11.80, z-score = -2.74, R) >droEre2.scaffold_4690 15981839 53 + 18748788 --------UGAGCAUUUAUAAGAAAUGCACAUAUUUCUCCAAGUGCUCCCAGCUCCACUUG --------.((((((((...(((((((....)))))))..))))))))............. ( -12.90, z-score = -3.36, R) >consensus AAAAAAUAAGAUCAUUUAUAACAAAUGUACAUAUUUCUCCAAGUGA____AGCUCCACUUG ............(((((.....)))))............((((((..........)))))) ( -5.04 = -5.04 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:22:48 2011