| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,057,627 – 7,057,734 |
| Length | 107 |
| Max. P | 0.677174 |
| Location | 7,057,627 – 7,057,734 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 93.92 |
| Shannon entropy | 0.10429 |
| G+C content | 0.48783 |
| Mean single sequence MFE | -30.08 |
| Consensus MFE | -27.27 |
| Energy contribution | -27.67 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.677174 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7057627 107 + 22422827 AGCAUGUCGUCGCGCAUCUCAGAUCUUUGGGAUCUCC---AGCCCAUAUAC-AUGUAACAUCUCAAGUGUCUUUCAGCGCGACGAACAUUGCGAGUCGUAUAGGUUUAUGG .((((((((((((((.....((((.((((((((...(---(..........-.))....)))))))).))))....)))))))).))).)))....((((......)))). ( -31.90, z-score = -2.05, R) >droSim1.chrX 5614233 107 + 17042790 AGCAUGUCGUCGCGCAUCUCAGAUCUUUGGGAUCUCC---AGCCCACAUAC-AUGUAACAUCUCAAGUGUCUUUCAGCGCGACGAACAUUGCGAGUCGUAUAGGUUUAUGG .((((((((((((((.....((((.((((((((...(---(..........-.))....)))))))).))))....)))))))).))).)))....((((......)))). ( -31.90, z-score = -1.95, R) >droSec1.super_24 267175 107 + 912625 AGCAUGUCGUCGCGCAUCUCAGAUCUUUGGGAUCUCC---AGCCCACAUAC-AUGUAACUUCUCAAGUGUCUUUCAGCGCGACGAACAUUGCGAGUCGUAUAGGUUUAUGG .((((((((((((((.....((((.(((((((....(---(..........-.)).....))))))).))))....)))))))).))).)))....((((......)))). ( -31.30, z-score = -1.75, R) >droYak2.chrX 7462041 108 - 21770863 AGCCUGUCGUCGCGCAUCUCAGAUCUUUGGGAUCUCC---AGCCCACAUACGAUAUAACAUCUCAAGUGUCUUUCAGCGCGACGAACAUUGCAAGUCGUUAAGGUUUAUGG .((.(((((((((((.....((((.((((((((....---...................)))))))).))))....)))))))).)))..))((..(.....)..)).... ( -27.90, z-score = -1.16, R) >droEre2.scaffold_4690 15959047 110 + 18748788 AGCCUGUCGUCGGGCAUCUCAGAUCUUUGGGAUCUCCUCCAGCCCACAUAC-ACACAACAUCUCGAGUGUCUUUCAGCGCGACGAACAUUGCAAGUCGUAUAGGUUUAUGG (((((((((((((((.....(((((.....)))))......))))......-..............((((......)))))))))....(((.....)))))))))..... ( -27.40, z-score = -0.32, R) >consensus AGCAUGUCGUCGCGCAUCUCAGAUCUUUGGGAUCUCC___AGCCCACAUAC_AUGUAACAUCUCAAGUGUCUUUCAGCGCGACGAACAUUGCGAGUCGUAUAGGUUUAUGG .((((((((((((((.....((((.((((((((..........................)))))))).))))....)))))))).))).)))((..(.....)..)).... (-27.27 = -27.67 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:22:47 2011