| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,053,083 – 7,053,177 |
| Length | 94 |
| Max. P | 0.551923 |
| Location | 7,053,083 – 7,053,177 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 89.46 |
| Shannon entropy | 0.18389 |
| G+C content | 0.57458 |
| Mean single sequence MFE | -36.28 |
| Consensus MFE | -24.62 |
| Energy contribution | -25.54 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.551923 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7053083 94 - 22422827 --AAAAAAGGAUGCAGGAUGCAGGAUGCAGUCUGGAGGCAACAUCCUGCUGCGGCCUGUCUCUACGAUGGCGUCGCAACGGCGCAUCUGCCAAAGG --......((((((.....((((((((..(((....)))..))))))))(((((((((((.....))))).)))))).....))))))........ ( -38.90, z-score = -2.41, R) >droSim1.chrX_random 2223274 91 - 5698898 --AAAAAAGGAUGCAGGAUGCAGGAUGCAGUCUGGAGGCAACAUC---CUGCGGCCUGUCUCAACGAUGGCGUCGCAACGGCGCAUCUGCCAAAGG --.......((.(((((.(((((((((..(((....)))..))))---))))).))))).))...((((.(((((...)))))))))......... ( -38.00, z-score = -2.84, R) >droSec1.super_24 262746 91 - 912625 --AAGAAAGGAUCCAGGAUGCAGGAUGCAGUCUGGAGGCAACAUC---CUGCGGCCUGUCUCAACGAUGGCGUCGCAUCGGCGCAUCUGCCAAAGG --.......((..((((.(((((((((..(((....)))..))))---))))).))))..))...((((.(((((...)))))))))......... ( -36.60, z-score = -2.00, R) >droYak2.chrX 7457484 87 + 21770863 --GAAAAAGGAUGCAGCAUGCAACAU----CCUGGAGGCAACAUC---CUGCGGCCUGUCACUACGAUGGCGUCGCCACGGCGCAUUUGCCAAAGG --.....((((((..(....)..)))----)))((((....).))---).((((((((((.....))))).)))))...((((....))))..... ( -28.00, z-score = -0.48, R) >droEre2.scaffold_4690 15954573 93 - 18748788 AGGAAAAAGGAUGCAGGAUGCAGGAUGCAGUCUGGAGGAAACAUC---CUGCGGCCUGUCUCCACGAUGGCGUCGCAAUGGCGCAUCUGCCAAAGG .((.....(((.(((((.(((((((((...((.....))..))))---))))).))))).)))..((((.((((.....))))))))..))..... ( -39.90, z-score = -3.00, R) >consensus __AAAAAAGGAUGCAGGAUGCAGGAUGCAGUCUGGAGGCAACAUC___CUGCGGCCUGUCUCAACGAUGGCGUCGCAACGGCGCAUCUGCCAAAGG ........((..(((((.(((((((((..(((....)))..))))...))))).)))))......((((.(((((...)))))))))..))..... (-24.62 = -25.54 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:22:47 2011