| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,480,068 – 10,480,162 |
| Length | 94 |
| Max. P | 0.819442 |
| Location | 10,480,068 – 10,480,162 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 66.04 |
| Shannon entropy | 0.51128 |
| G+C content | 0.44569 |
| Mean single sequence MFE | -27.86 |
| Consensus MFE | -11.40 |
| Energy contribution | -11.71 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.819442 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10480068 94 + 23011544 -------UUACAAAAAAGCGCGAUAAAAAUAGAAUGCGAAUUGGCGGCAAGUGAGGGG--------AGCC------GCCGAU-GAUAUCCAAUUUGUAUGAUAAUUAUGCGCACAG -------..........((((.((((...((..(((((((((((((((..........--------.)))------)))(((-...))).)))))))))..)).)))))))).... ( -26.30, z-score = -2.51, R) >droSim1.chr2L 10283689 91 + 22036055 -------UUACAAAAAA-CACUAUACAAAUCGGAUGCGGAUUGGCGGCAAGUGGGAACUC-----CAGCC------GCCGAG-GAUAUCCAUUUCGUAUGAUAAUUAUGCG----- -------..........-...(((((((((.(((((....((((((((..(.(....).)-----..)))------))))).-..))))))))).)))))...........----- ( -26.20, z-score = -2.25, R) >droSec1.super_3 5907863 97 + 7220098 -------UUACAAAAAAACGCAAUAAAAAUCGAAUGCGGAUUGGCGGCAAGUGGGAACUC-----CAGCC------GCCGAG-GAUAUCCAAUUCGUAUGAUAAUUAUGCUCACAG -------............(((.(((..(((..(((((((((((((((..(.(....).)-----..)))------)))..(-(....))))))))))))))..))))))...... ( -28.20, z-score = -2.93, R) >droEre2.scaffold_4929 11692063 114 - 26641161 CUAAAGUUCAUGAAGGAGCACAAGGACAA--GGACAAGGAUUGGAAGUGAAUGUGGUCCUGUGGUCCGCCAUGUAAGCCGAUUGCUAACCAAUCCCUAUGGUCAUUAUGCUCACAG ...............(((((.((.(((..--......(((((((.((..(...((((..(((((....)))))...)))).)..))..))))))).....))).)).))))).... ( -30.72, z-score = -0.39, R) >consensus _______UUACAAAAAAGCACAAUAAAAAUCGAAUGCGGAUUGGCGGCAAGUGGGAACUC_____CAGCC______GCCGAG_GAUAUCCAAUUCGUAUGAUAAUUAUGCGCACAG .................................(((((((((((((((............................))))........)))))))))))................. (-11.40 = -11.71 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:30:17 2011