| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,032,140 – 7,032,212 |
| Length | 72 |
| Max. P | 0.963813 |
| Location | 7,032,140 – 7,032,212 |
|---|---|
| Length | 72 |
| Sequences | 3 |
| Columns | 72 |
| Reading direction | reverse |
| Mean pairwise identity | 90.74 |
| Shannon entropy | 0.12754 |
| G+C content | 0.51852 |
| Mean single sequence MFE | -14.06 |
| Consensus MFE | -13.60 |
| Energy contribution | -13.93 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.73 |
| SVM RNA-class probability | 0.963813 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7032140 72 - 22422827 CCAUGCCCAACCCCCACGACUUCCGCCCUUUUCGGAUGGCCUGCCAACCGAUAACAAUGGAAUAUAUCGAAA ................(((.(((((......((((.(((....))).))))......)))))....)))... ( -15.50, z-score = -2.21, R) >droSec1.super_13432 872 72 + 1042 CCAUGCCCAACCCCCACGACUUCCGCCCUUUUCGGAUGGCCUGCCAACCGAUAACAAUAGAAUAUAUCGAAA ................(((.(((........((((.(((....))).))))........)))....)))... ( -11.19, z-score = -1.37, R) >droEre2.scaffold_4690 15933520 72 - 18748788 CCACUCCCCCACUCCACGACUUCCGCUUUUUUCGGAUGGCCUGCCAGCCGAUAACAAUGGAAUAUAUCGAAA ................(((.(((((......((((.(((....))).))))......)))))....)))... ( -15.50, z-score = -1.98, R) >consensus CCAUGCCCAACCCCCACGACUUCCGCCCUUUUCGGAUGGCCUGCCAACCGAUAACAAUGGAAUAUAUCGAAA ................(((.(((((......((((.(((....))).))))......)))))....)))... (-13.60 = -13.93 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:22:45 2011