| Sequence ID | dm3.chrX |
|---|---|
| Location | 7,012,198 – 7,012,264 |
| Length | 66 |
| Max. P | 0.793640 |
| Location | 7,012,198 – 7,012,264 |
|---|---|
| Length | 66 |
| Sequences | 4 |
| Columns | 66 |
| Reading direction | forward |
| Mean pairwise identity | 94.70 |
| Shannon entropy | 0.08604 |
| G+C content | 0.52873 |
| Mean single sequence MFE | -22.68 |
| Consensus MFE | -20.65 |
| Energy contribution | -20.77 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.793640 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 7012198 66 + 22422827 UGGCUCUGCUGGUUGGGGUUGCUAUCGUAUCGUAUGUUGAUUUAGCUAACUCGUAGUUGGGGCCGA .((((((((((..((((...((((....((((.....)))).))))...))))))).))))))).. ( -20.50, z-score = -1.56, R) >droSim1.chrX 5603506 66 + 17042790 UGGCUCUGCUGGCUGGGGUUGCUAUCGUAUCGUAUGUUGAUUUAGCUAACUCGUAGUUGGGGCCGA .((((((...((((((((((((((....((((.....)))).)))).))))).))))))))))).. ( -23.20, z-score = -2.11, R) >droSec1.super_24 231806 66 + 912625 UGGCUCUGCUGGCUGGGGUUGCUAUCGUAUCGUAUGUUGAUUUAGCUAACUCGUAGUUGGGGCCGA .((((((...((((((((((((((....((((.....)))).)))).))))).))))))))))).. ( -23.20, z-score = -2.11, R) >droEre2.scaffold_4690 15923133 65 + 18748788 UGGCUCCGCUGGCUGGGGUGGCUUUCGCAUCGC-UGUUGAUUUAGCUAACUCGUAGUUGGGGCCGA .((((((((((..((((.(((((.(((((....-)).)))...))))).))))))).))))))).. ( -23.80, z-score = -0.93, R) >consensus UGGCUCUGCUGGCUGGGGUUGCUAUCGUAUCGUAUGUUGAUUUAGCUAACUCGUAGUUGGGGCCGA .((((((...((((((((((((((....((((.....)))).)))).))))).))))))))))).. (-20.65 = -20.77 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:22:43 2011