| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,990,612 – 6,990,662 |
| Length | 50 |
| Max. P | 0.840469 |
| Location | 6,990,612 – 6,990,662 |
|---|---|
| Length | 50 |
| Sequences | 4 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 64.67 |
| Shannon entropy | 0.58054 |
| G+C content | 0.37000 |
| Mean single sequence MFE | -7.80 |
| Consensus MFE | -4.22 |
| Energy contribution | -3.48 |
| Covariance contribution | -0.75 |
| Combinations/Pair | 1.83 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.840469 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6990612 50 - 22422827 CACCAACUAUGCCACCAUGUGUUUCUUGCUGCGCAUAAAUUGGAGUAUUU ..((((.(((((((.((.(.....).)).)).)))))..))))....... ( -9.40, z-score = -0.52, R) >droSim1.chrX 5531486 50 - 17042790 CACCAACUAUUCCACCAUGUGUUUCUUGCUGCGCAUAAACUGUAGUUUUU ....((((((......((((((........)))))).....))))))... ( -8.80, z-score = -1.74, R) >droSec1.super_24 210691 50 - 912625 CACCAACUAUUCCACCAUGUGUUUCUUGCUGCACAUAAAUUGUAGUUUUU ....((((((......((((((........)))))).....))))))... ( -9.20, z-score = -2.30, R) >droAna3.scaffold_13117 2335436 50 - 5790199 ACCCAGACACCCUUUCCUGUAGAAAUAAUUAUUUGGAUUUCAAAAUAUUU ..(((((.....((((.....))))......))))).............. ( -3.80, z-score = 0.09, R) >consensus CACCAACUAUUCCACCAUGUGUUUCUUGCUGCGCAUAAAUUGUAGUAUUU ................((((((........)))))).............. ( -4.22 = -3.48 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:22:42 2011