| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,988,436 – 6,988,538 |
| Length | 102 |
| Max. P | 0.540490 |
| Location | 6,988,436 – 6,988,538 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 92.54 |
| Shannon entropy | 0.13018 |
| G+C content | 0.53922 |
| Mean single sequence MFE | -33.88 |
| Consensus MFE | -27.22 |
| Energy contribution | -27.50 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.540490 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6988436 102 + 22422827 CGGCGGCCAAGUGGGUGGGGCGGCCUAAAUCGCAUUGGGUCGCUCAGAAACACAAAAACCAGAAUAAAAGCCGGCUGGAAUGGGGUGGU---ACGGUCAUCAAAU .(..((((..(((..(.(((((((((((......)))))))))))..)..)))................((((.((......)).))))---..))))..).... ( -34.30, z-score = -1.70, R) >droEre2.scaffold_4690 15899081 102 + 18748788 CGGCGGGAAAGUGGGUGGGGCGGCCUAAAUCGCAUUGGGUCGCUCAGAAACAUAAAAACCAGAAUAAAAGCCGGGUGGAAUGGGGUGGU---AUGGUCACCAAAU ((((.........(((.(((((((((((......)))))))))))............))).........))))(((((.(((......)---))..))))).... ( -32.19, z-score = -2.01, R) >droYak2.chrX 7405034 98 - 21770863 -------AAAGUGGGUGGGGCGGCCUAAAUCACAUUGGGUGGCUCAGAAACACAAAAACCAGAAUAAAAGCCGGGUGGAAUGGGGUGGUGGUAUGGUCACCAAAU -------......((((((((.((((((......)))))).))))............((((...((..(.((.(......).)).)..))...)))))))).... ( -28.10, z-score = -1.09, R) >droSec1.super_24 208516 102 + 912625 CGGCGGCCAAGUGGGUGGGGCGGCCUAAAUCGCAUUGGGUCGCUCAGAAACACAAAAACCAGAAUAAAAGCCGGCUGGAAUGGGGUGGU---ACGGUCACCAAAU .((.((((..(((..(.(((((((((((......)))))))))))..)..)))................((((.((......)).))))---..)))).)).... ( -37.40, z-score = -2.12, R) >droSim1.chrX 5528923 102 + 17042790 CGGCGGCCAAGUGGGUGGGGCGGCCUAAAUCGCAUUGGGUCGCUCAGAAACACAAAAACCAGAAUAAAAGCCGGCUGGAAUGGGGUGGU---ACGGUCACCAAAU .((.((((..(((..(.(((((((((((......)))))))))))..)..)))................((((.((......)).))))---..)))).)).... ( -37.40, z-score = -2.12, R) >consensus CGGCGGCCAAGUGGGUGGGGCGGCCUAAAUCGCAUUGGGUCGCUCAGAAACACAAAAACCAGAAUAAAAGCCGGCUGGAAUGGGGUGGU___ACGGUCACCAAAU ..........(((..(.(((((((((((......)))))))))))..)..))).....((((............)))).....(((((........))))).... (-27.22 = -27.50 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:22:41 2011