Locus 13502

Sequence ID dm3.chrX
Location 6,961,734 – 6,961,799
Length 65
Max. P 0.999872
window18597

overview

Window 7

Location 6,961,734 – 6,961,799
Length 65
Sequences 6
Columns 65
Reading direction forward
Mean pairwise identity 65.95
Shannon entropy 0.68650
G+C content 0.36606
Mean single sequence MFE -16.02
Consensus MFE -8.63
Energy contribution -8.50
Covariance contribution -0.13
Combinations/Pair 1.64
Mean z-score -2.98
Structure conservation index 0.54
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 4.66
SVM RNA-class probability 0.999872
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 6961734 65 + 22422827
UAUAUUGUUUUAGAUUCUUUUUUCGUUUUGGCUUUUGCCGAGACACGGGAGAGUAAUUAAUACAG
.....(((.(((.(((((((..(.((((((((....)))))))))..)))))))...))).))). ( -18.30, z-score =  -4.21, R)
>droAna3.scaffold_13117 2308904 65 + 5790199
AUUGUAGCCUUCGAAAGGUUGUUUCUUGUGAUUGUGGGUGCGACACUCGGCUCUAAUUGAUUUAA
((((.((((..(....)(((((..((..(....)..)).)))))....)))).))))........ ( -14.40, z-score =  -0.89, R)
>droEre2.scaffold_4690 15872659 51 + 18748788
--------------CUUUUCUUUUGUUUGGGCUUUUGCCGAGACAUCGGAGAGUAAUUGAUUCAG
--------------.((((((..(((((.(((....))).)))))..))))))............ ( -15.80, z-score =  -2.98, R)
>droYak2.chrX 7376354 65 - 21770863
GUUAUUUUUGUUUCUUUUUUUUUUAUUUCGACUUUUGCCGAGACAUCGGCGAGUAAUUGAUGCAG
...........................((((..((((((((....))))))))...))))..... ( -12.70, z-score =  -2.10, R)
>droSec1.super_24 181895 65 + 912625
UAUAUGGUUUUUGAUUAUUUUUUCGUUUUGGCAUUUGCCGAGACACCGGAGAGUAAUUAAUACAG
......((..(((((((((((((.((((((((....))))))))...))))))))))))).)).. ( -19.70, z-score =  -5.03, R)
>droSim1.chrX 5475907 65 + 17042790
UAUAUUGUUUUUGAUUUUUUUUUCGUUUUGGCAUUUGCCGAGACACCGGAGAGUAAUGCAAACAG
....((((.....(((((((....((((((((....))))))))...)))))))...)))).... ( -15.20, z-score =  -2.68, R)
>consensus
UAUAUUGUUUUUGAUUUUUUUUUCGUUUUGGCUUUUGCCGAGACACCGGAGAGUAAUUGAUACAG
...............((((((...((((((((....))))))))...))))))............ ( -8.63 =  -8.50 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:22:39 2011