| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,958,237 – 6,958,348 |
| Length | 111 |
| Max. P | 0.718630 |
| Location | 6,958,237 – 6,958,348 |
|---|---|
| Length | 111 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 73.48 |
| Shannon entropy | 0.43506 |
| G+C content | 0.36036 |
| Mean single sequence MFE | -28.50 |
| Consensus MFE | -12.55 |
| Energy contribution | -14.05 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.718630 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6958237 111 - 22422827 GGAAAUUUCAAUUAGGCAAGCACUUAAUAAUUGGUGCUUA-------UUAUUAAAUGAAAUUGCACAUCAUAUGAUGAGCUG-CUCUAUUGUGGGGCAAAUUCUCGCUUUGAUUAUCCA ((((((((((.((((..(((((((........))))))).-------...)))).)))))))((.((((....)))).))((-((((.....)))))).................))). ( -30.10, z-score = -2.57, R) >droEre2.scaffold_4690 15869166 103 - 18748788 GGAAAUUGCAAUUAGGUAAGCACUUGAUAAUUGGUGCUUA-------UUAAUAAAUGAAUUUGUCGAUCCCUACAAAU--------UAUUGCG-GGGAACUUCCCGCUUUCAUUGCCCG ((.....(((((..((((((((((........))))))))-------))........(((((((.(....).))))))--------)...(((-(((....))))))....))))))). ( -28.40, z-score = -2.58, R) >droYak2.chrX 7372742 119 + 21770863 GGAACUUUCAAUUAGCAAAGCACUUAAUAAUUGCCGCUUAUUGCUUUUUAAUAGCGGAAAUUGCCGAGCGCUAAAAUUUUUGUCUAUUUUGUGUGGGAAAUUCUCGCAUUGAUUAUCCA (((....(((..(((((((((.(((..(((((.(((((.((((.....))))))))).)))))..))).))).......))).)))....(((((((.....))))))))))...))). ( -28.31, z-score = -1.33, R) >droSec1.super_24 178439 109 - 912625 GGAAAUUUCAAUUAGGGAAGCACUUAAUAAUUGGUGCUUA-------UUAAUAAAUGAAAUUGCACAUCAUA--AAGGCCCG-CUCUAUUGUGAGGCAAAUUCUCGCGUUGAUUAUCCA (((....(((((..((((((((((........)))))...-------.............((((...(((((--((((....-).)).)))))).)))).)))))..)))))...))). ( -27.20, z-score = -1.93, R) >consensus GGAAAUUUCAAUUAGGAAAGCACUUAAUAAUUGGUGCUUA_______UUAAUAAAUGAAAUUGCACAUCACAA_AAGU_CUG_CUCUAUUGUG_GGCAAAUUCUCGCUUUGAUUAUCCA (((....((((......(((((((........)))))))...................................................((((((.....)))))).))))...))). (-12.55 = -14.05 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:22:38 2011