| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,954,600 – 6,954,697 |
| Length | 97 |
| Max. P | 0.732256 |
| Location | 6,954,600 – 6,954,697 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 74.17 |
| Shannon entropy | 0.45865 |
| G+C content | 0.52230 |
| Mean single sequence MFE | -30.38 |
| Consensus MFE | -20.80 |
| Energy contribution | -21.05 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.732256 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6954600 97 + 22422827 ACAGCAAUUCCCAACUCGAUUGCGUGCUUCUAUUCAUGUGUGGCCUUUAACCCGAUUGAUGGCCACCGGCUGGCUGCCAUUC---UGGGGGUUAAGGUUG------- .((((((((((((........(((((........)))))((((((.((((.....)))).)))))).(((.....)))....---))))))))...))))------- ( -29.90, z-score = -0.44, R) >droSec1.super_24 174782 97 + 912625 ACAGCAAUUCCCAACUCGAUUGCGUGCUUCUAUUCAUGUGUGGCCUUUAACCCGAUUGAUGGCCACGGGCUGGCUGCCUUUC---UGUGGGUUAAGGUUG------- .((((....((((........(((((........)))))((((((.((((.....)))).))))))((((.....))))...---..)))).....))))------- ( -29.20, z-score = -0.69, R) >droYak2.chrX 7369088 93 - 21770863 ACAGCAAUUCCCAACUCGAUUGCGUGCUUCUAUUCAUGUGUGGCCUUUAACCCGAUUGAUGGCCACGAGCUGGC----UUUC---UAGGGGUUAAGGUUG------- .((((....(((..(((....(((((........)))))((((((.((((.....)))).)))))))))((((.----...)---)))))).....))))------- ( -28.00, z-score = -1.16, R) >droEre2.scaffold_4690 15865733 96 + 18748788 ACAGCAAUUCCCAACUCGAUUGCGUGCUUCUAUUCAUGUGUGGCCUUUAACCCGAUUGACGGCCACGCGCUGGCGAGCUUUC---UG-GGGUUAAGGUUG------- .((((...(((((.((((...(((((........)))((((((((.((((.....)))).))))))))))...)))).....---))-))).....))))------- ( -31.90, z-score = -1.45, R) >dp4.chrXL_group1e 5719693 107 - 12523060 AGGGCAAUUCCCGACUCGAUUGCGUGACGCUGUUCAUGUGUGGACUUUGCCCUUGCCCUUCCCCUCCCGUUUUGUAUCCUUCGGUUAAGGGUUAAGGCCUACACUCA (((((((.(((..((..((..(((...)))...))..))..)))..))))))).(((.(..((((.(((............)))...))))..).)))......... ( -30.10, z-score = -0.84, R) >droPer1.super_25 1309249 103 - 1448063 AGGGCAAUUCCCUACUCGAUUGCGUGACGCUGUUCAUGUGUGGCCUUUGCCCUUGCCC----CCACCCGUUUUGUAUUCUUCGGUUAAGGGUUAAGGCCCACACUCA ((((.....))))....((..(((...)))...)).((((.((((((.(((((((.((----....................)).))))))).)))))))))).... ( -33.15, z-score = -1.82, R) >consensus ACAGCAAUUCCCAACUCGAUUGCGUGCUUCUAUUCAUGUGUGGCCUUUAACCCGAUUGAUGGCCACCCGCUGGCUACCUUUC___UAAGGGUUAAGGUUG_______ .((((....(((.........(((((........)))))((((((.((((.....)))).))))))......................))).....))))....... (-20.80 = -21.05 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:22:37 2011