| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,475,275 – 10,475,381 |
| Length | 106 |
| Max. P | 0.886060 |
| Location | 10,475,275 – 10,475,381 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 72.76 |
| Shannon entropy | 0.48845 |
| G+C content | 0.42297 |
| Mean single sequence MFE | -19.89 |
| Consensus MFE | -15.15 |
| Energy contribution | -15.41 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.01 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.886060 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10475275 106 + 23011544 AACUCACUGAUGU----GCAAAGCCACAGGGACCAUUUGACACAAUUCCCCUAAACAAAUGGUAAGUGUCCUCUGGCACACCCACAAUUACUCGUAUAAAAUCCACUUUU---------- ..........(((----(......))))(((((((((((................))))))))..(((((....))))).)))...........................---------- ( -20.49, z-score = -0.93, R) >droSim1.chr2L 10278410 93 + 22036055 AACUCACUGAUGU----GCAAAGCCACAGGGCCCAUUUGACACAAUUCCUCUAAACAAAUGGUAAGUGUCCUCCGGCACACCCACAAUUACACUUUU----------------------- ..........(((----(....(((..((((((((((((................))))))).....)))))..))).....))))...........----------------------- ( -18.29, z-score = -0.76, R) >droSec1.super_3 5903160 93 + 7220098 AACUCACUGAUGU----GCAAAGCCACUGGGACCAUUUGACACAAUUCCUCUAAACAAAUGGUAAGUGUCCUCCGGCACACCCACAAUUACACUUUU----------------------- ....(((....))----).........((((((((((((................))))))))..(((((....))))).)))).............----------------------- ( -19.79, z-score = -1.32, R) >droYak2.chr2L 6881395 110 + 22324452 AACACACUGAUGUGCUUGCAAAGCCACAGGGACCAUUUGACACAAUUCCUCUUAACAAAUGGUAAGUGUCCUCUGACACACCCACACUUACUCAUAUAAAAUAAACAUUG---------- ........((((((((.....)))....(((((((((((................))))))))..(((((....))))).))).....................))))).---------- ( -22.79, z-score = -2.03, R) >droEre2.scaffold_4929 11684276 110 - 26641161 AACUCACUGAUGUACAUGCAAAGCCACAGGGACCAUUUGACACAAUUUCUCUAAACAAAUGGUAAGUGUCCUCUGGCACACCCACAUUUACUCAUAUAAAUUGAACUUUG---------- ..................(((((.....(((((((((((................))))))))..(((((....))))).)))........(((.......))).)))))---------- ( -20.79, z-score = -0.93, R) >droAna3.scaffold_12916 14319269 107 + 16180835 --------AAUUU----ACAGA-CUACUGGGACUGUUUGACACACUUUCGCCUUCCAAAUGGAAAAUGUCCGCACGCACACCCACAUUCGCUCGAAUAGUCAGCAAUUUUUCUAAGACUU --------.....----.(((.-...))).(((((((((((...........((((....))))..(((.(....).))).........).))))))))))................... ( -17.20, z-score = -0.11, R) >consensus AACUCACUGAUGU____GCAAAGCCACAGGGACCAUUUGACACAAUUCCUCUAAACAAAUGGUAAGUGUCCUCUGGCACACCCACAAUUACUCAUAUAAA_U__ACUUU___________ ............................(((((((((((................))))))))..(((((....))))).)))..................................... (-15.15 = -15.41 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:30:16 2011