| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,939,761 – 6,939,866 |
| Length | 105 |
| Max. P | 0.986188 |
| Location | 6,939,761 – 6,939,866 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 68.99 |
| Shannon entropy | 0.55780 |
| G+C content | 0.50527 |
| Mean single sequence MFE | -19.77 |
| Consensus MFE | -11.97 |
| Energy contribution | -12.00 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.23 |
| SVM RNA-class probability | 0.986188 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6939761 105 - 22422827 --------CCCAAAUACCCCAAUUCUCCACUCGGAGUUUUGAUGCUGGC----ACUGGCACGCAUCAAAUUCCCUGCUCCUUUUUACCCAGACCUCCGCCGAUUCUCUUUUCCACAA --------.......................(((((.((((((((..((----....))..))))))))....(((............)))..)))))................... ( -17.70, z-score = -1.29, R) >droSim1.chrX 5470464 107 - 17042790 --------CCCAAUCCCCCAA-UUCUCCACUCGGAGUUUUGAUGCUGGCUGGCAUUGGCACGCAUCAAAUUCCCUGCUCCUUUUU-UCCAGACCUCCGCCGAUUCUCUUUUCCACAA --------.............-.........(((((.((((((((..(((......)))..))))))))....(((.........-..)))..)))))................... ( -19.40, z-score = -0.35, R) >droSec1.super_24 159902 107 - 912625 --------CCCAAUCCCCCAA-UUCUCCACUCGGAGUUUUGAUGCUGGCUGGCAUUGGCACGCAUCAAAUUCCCUGCUCCUUUUU-CCCAGACCUCCACCGAUUCUCUUUUCCACAA --------.............-..........(((((((((((((..(((......)))..))))))))......))))).....-............................... ( -18.80, z-score = -0.43, R) >droYak2.chrX 7352860 105 + 21770863 -------CCCCAAUCUCCAAAGUUCCUCACUUGGAGUUUUGAUGCUGGC--AGAGUGGCACGCAUCAAAUUCCCUGCUCCAGUU--CCCGAACCUUCGCUGAUUUUCCUUACACAA- -------....((((..(((.((((.....(((((((((((((((((.(--.....).)).))))))))......)))))))..--...)))).)).)..))))............- ( -23.60, z-score = -1.19, R) >droEre2.scaffold_4690 15851105 102 - 18748788 CCCAACUCCCCAAACCCCCAA-UUCUCCACACGGAGUUUUGAUGCUGCC----ACUGGCACGCAUCGAAUUCCCUGCUCCUGUG--CCCACACC-CCACUGAUUUUCUUU------- .....................-.....((((.(((((((((((((((((----...)))).))))))))......)))))))))--........-...............------- ( -24.30, z-score = -4.61, R) >droAna3.scaffold_13117 3504207 88 + 5790199 ---------CCUCUCCCUU---UUCCCUUUUAGGAGUUUU--UGAUG-------CUGGCACGCAUCGAAUUCCCUGUUUU------UCCACUUUUCCAUUUUCCGCACCCACAAA-- ---------..........---........((((.(..((--(((((-------(......))))))))..)))))....------.............................-- ( -14.80, z-score = -2.37, R) >consensus ________CCCAAUCCCCCAA_UUCUCCACUCGGAGUUUUGAUGCUGGC____ACUGGCACGCAUCAAAUUCCCUGCUCCUUUU__CCCAGACCUCCACCGAUUCUCUUUUCCACA_ ................................(((((((((((((((.(.......).)).))))))))......)))))..................................... (-11.97 = -12.00 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:22:34 2011