| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,914,818 – 6,914,924 |
| Length | 106 |
| Max. P | 0.511040 |
| Location | 6,914,818 – 6,914,924 |
|---|---|
| Length | 106 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 65.90 |
| Shannon entropy | 0.54989 |
| G+C content | 0.31817 |
| Mean single sequence MFE | -20.43 |
| Consensus MFE | -7.55 |
| Energy contribution | -9.05 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.511040 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chrX 6914818 106 + 22422827 ACUAAAUUUAAACCAACAAAUCACUGUUCUACUUAAAUAACUUGAAACGAAGUGGUCGUUUCAGCUCCAUGCAGAUUUAAGUGA---UUUCGUUCUGUUUUUUC-GUAAG .........((((.(((((((((((..(((............((((((((.....))))))))((.....)))))....)))))---))).)))..))))....-..... ( -21.90, z-score = -2.24, R) >droSim1.chrX 5439462 106 + 17042790 ACUAACUAUAAGCCAAACAAUCACUGUUUUACUUAAAUAACUUGAAACGAAGUGGUCGUUUCAGCUCCAUGCAGAUUUAAGUGA---UUCAGUUCUGUUUUUUU-GUAAG ......((((((..(((((...((((..((((((((((....((((((((.....))))))))((.....))..))))))))))---..))))..))))).)))-))).. ( -28.60, z-score = -3.87, R) >droSec1.super_24 142583 107 + 912625 ACUAACUAUAAGCCAAACAAUCACUGUUUCACUCAAAUAACUUGAAACGAAGUGGUCAUUUCAGCUCCAUGCAGAUUUAAGUGA---UUCAGUUCUGUUUUUUUUGUAAG ......((((((..(((((...((((..(((((.((((..........(((((....))))).((.....))..)))).)))))---..))))..)))))..)))))).. ( -22.50, z-score = -1.96, R) >droVir3.scaffold_12928 6231271 87 - 7717345 ------------CCUUGCGAUUGCC-UUUUAAUUACUUUGCAGCAAAUAAA--CAUAAACAAAAAUUUAUAUCGAGUUGAGUAAAAAUUGCGAUUUGUUUUU-------- ------------..((((((((...-.(((((((..((((...))))....--.(((((......)))))....)))))))....)))))))).........-------- ( -8.70, z-score = 1.35, R) >consensus ACUAACUAUAAGCCAAACAAUCACUGUUUUACUUAAAUAACUUGAAACGAAGUGGUCAUUUCAGCUCCAUGCAGAUUUAAGUGA___UUCAGUUCUGUUUUUUU_GUAAG ............................((((((((((....((((((((.....))))))))((.....))..)))))))))).......................... ( -7.55 = -9.05 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:22:33 2011