Locus 13495

Sequence ID dm3.chrX
Location 6,910,597 – 6,910,687
Length 90
Max. P 0.996649
window18589

overview

Window 9

Location 6,910,597 – 6,910,687
Length 90
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 72.62
Shannon entropy 0.49489
G+C content 0.44908
Mean single sequence MFE -26.57
Consensus MFE -18.90
Energy contribution -19.78
Covariance contribution 0.88
Combinations/Pair 1.11
Mean z-score -2.27
Structure conservation index 0.71
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.96
SVM RNA-class probability 0.996649
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 6910597 90 - 22422827
------CCAGCUGCCAUCCAUUCUGUAGGCCACUUUGAUUAAUCGUAGCUGCAUAUGCAGCUGCAUUUGGUACGAAAGCCACUAGUUAAUCAGUUU
------......(((............)))....(((((((((.((((((((....))))))))...((((......))))...)))))))))... ( -26.60, z-score =  -2.23, R)
>droSim1.chrX 5433538 90 - 17042790
------CCUGCUGCCACUCAUUCUGUAGGCCAAUUUGAUUAAUCGUAGCUGCAUAUGCAGCUGCAUUUGGUACGAAAGCCACUAGUUAAUCAGUUU
------(((((.............))))).....(((((((((.((((((((....))))))))...((((......))))...)))))))))... ( -28.82, z-score =  -2.88, R)
>droSec1.super_24 137531 90 - 912625
------CCUGCUGCCAUUCAUUCUGUAGGACAAUUUGAUUAAUCGUAGCUGCAUAUGCAGCUGCAUUAGGUACGAAAGCCACUAGUUAAUCAGUUU
------(((((.............))))).....(((((((((.((((((((....))))))))....(((......)))....)))))))))... ( -29.12, z-score =  -3.28, R)
>droEre2.scaffold_4690 15832337 70 - 18748788
--------------------------AGCCCAAUGUGAUUAAUCGUAGCUGCAUGUGCAGCUGCAGUCGCUCCGCAAGCCACUAGCUAAUCAGUUA
--------------------------.........((((((...((((((((....))))))))(((.(((.....))).)))...)))))).... ( -22.70, z-score =  -2.03, R)
>droYak2.chrX 7331072 92 + 21770863
CCUGCGUGGCAUGCAACAUAAUGGAUGCCCCCAUUUGAUUAAUCGCUGCUGCAU----UGCUGCAUUUGGCUCGAAAGCCACUAGUUAAUCAUUUA
..((.(.(((((.((......)).))))).)))..((((((((.((.((.....----.)).))...(((((....)))))...)))))))).... ( -25.60, z-score =  -0.93, R)
>consensus
______CCUGCUGCCACUCAUUCUGUAGGCCAAUUUGAUUAAUCGUAGCUGCAUAUGCAGCUGCAUUUGGUACGAAAGCCACUAGUUAAUCAGUUU
...................................((((((((.((((((((....))))))))....(((......)))....)))))))).... (-18.90 = -19.78 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:22:33 2011