| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,881,954 – 6,882,027 |
| Length | 73 |
| Max. P | 0.717425 |
| Location | 6,881,954 – 6,882,027 |
|---|---|
| Length | 73 |
| Sequences | 12 |
| Columns | 84 |
| Reading direction | forward |
| Mean pairwise identity | 80.73 |
| Shannon entropy | 0.36372 |
| G+C content | 0.44849 |
| Mean single sequence MFE | -22.37 |
| Consensus MFE | -11.19 |
| Energy contribution | -11.27 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.700363 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6881954 73 + 22422827 ---------ACAGUUGCGUAAUUGCUUAAAUUGAAAGCGCCUUGAGGCGCUAUCAUUGGG--CAUGCGACACUAAUUCAAGCUG ---------...((((((....(((((((..(((.((((((....)))))).))))))))--)))))))).............. ( -26.70, z-score = -3.34, R) >droSim1.chrX 5404270 73 + 17042790 ---------ACAGUUGCGUAAUUGCUUAAAUUGAAAUCGCCUUGAGGCGCUAUCAUUGGG--CAUGCGACACUAAUUCGAGCUG ---------...((((((....(((((((..(((...((((....))))...))))))))--)))))))).............. ( -20.20, z-score = -1.29, R) >droSec1.super_24 109379 73 + 912625 ---------ACAGUUGCGUAAUUGCUUAAAUUGAAAUCGCCUUGAGGCGCUAUCAUUGGG--CAUCCGACACUAAUUCGAGCUG ---------.(((((.......(((((((..(((...((((....))))...))))))))--))..(((.......)))))))) ( -17.80, z-score = -0.81, R) >droEre2.scaffold_4690 15803824 73 + 18748788 ---------ACAGUUGCGUAAUUGCUUAAAUUGAAAGCGCCUUGAGGCGCUAUCAUUGGG--CAUGCGACACUAAUUUGAGCUG ---------...((((((....(((((((..(((.((((((....)))))).))))))))--)))))))).............. ( -26.70, z-score = -3.34, R) >droYak2.chrX 7302025 73 - 21770863 ---------ACAGUUGCGUAAUUGCUUAAAUUGAAAGCGCCUUGAGGCGCUAUCAUUGGG--CAUGCGACACUAAUUCAAGCUG ---------...((((((....(((((((..(((.((((((....)))))).))))))))--)))))))).............. ( -26.70, z-score = -3.34, R) >droAna3.scaffold_13417 359346 74 + 6960332 ---------ACAGUUGCGUAAUUGUCUAAAUUGAAAGCGCCUUGAGGCGCUAUCAUUGGGG-CAUGCGACACUAAUUCGAGCUG ---------...((((((....(((((....(((.((((((....)))))).)))...)))-)))))))).............. ( -26.40, z-score = -2.92, R) >dp4.chrXL_group1e 6766069 62 + 12523060 ---------ACUGUUGCGUAAUUGUAUAAAUUGAAAGCGCCUUGAGGCGCUAUCAUUGGG--CAUGCGGCAUG----------- ---------..(((((((....(((......(((.((((((....)))))).)))....)--)))))))))..----------- ( -21.90, z-score = -2.29, R) >droPer1.super_25 101803 62 + 1448063 ---------ACUGUUGCGUAAUUGUAUAAAUUGAAAGCGCCUUGAGGCGCUAUCAUUGGG--CAUGCGGCAUG----------- ---------..(((((((....(((......(((.((((((....)))))).)))....)--)))))))))..----------- ( -21.90, z-score = -2.29, R) >droWil1.scaffold_181096 4783030 84 + 12416693 AAAACUAUUGCGAUUGCGUAAUUGUCUCAAUUGAAAACGCCUUGAGGCGCUAUCAUUUGCCACAUGCGGCACUAAUUUGAGAUG ......((((((....)))))).(((((((.(((...((((....))))...)))..((((......)))).....))))))). ( -23.20, z-score = -2.26, R) >droVir3.scaffold_13042 5086226 66 - 5191987 ---------ACAGUUGCGUAAUUGUCUAAAUUGAAAGCGCCUUGAGGCGCUAUCAUUGUC--AU-GCGGCGCUAAUUU------ ---------...(((((((((((.....))))((.((((((....)))))).))......--))-)))))........------ ( -20.60, z-score = -1.81, R) >droMoj3.scaffold_6359 1235786 67 + 4525533 ---------ACAGUUGCGUAAUUGCCUAAAUUGAAAGCGCCUUGAGGGGCUAUCAUUGUC--AUUGAGGCGCUAAUUU------ ---------.((((((((....)))...)))))..(((((((..(..(((.......)))--.)..))))))).....------ ( -22.20, z-score = -2.45, R) >droGri2.scaffold_14853 4201815 66 + 10151454 ---------ACAGUUGCGUAAUUGUCUAAAUUGAAAACGCCUUGAGGCGCUAUCAUUGUC--AU-GCGGCGCUAAUUU------ ---------...(((((((((((.....))))((...((((....))))...))......--))-)))))........------ ( -14.10, z-score = 0.13, R) >consensus _________ACAGUUGCGUAAUUGCCUAAAUUGAAAGCGCCUUGAGGCGCUAUCAUUGGG__CAUGCGACACUAAUUC_AGCUG ............(((((.(((((.....)))))....((((....))))................))))).............. (-11.19 = -11.27 + 0.08)
| Location | 6,881,954 – 6,882,027 |
|---|---|
| Length | 73 |
| Sequences | 12 |
| Columns | 84 |
| Reading direction | reverse |
| Mean pairwise identity | 80.73 |
| Shannon entropy | 0.36372 |
| G+C content | 0.44849 |
| Mean single sequence MFE | -17.43 |
| Consensus MFE | -12.47 |
| Energy contribution | -12.59 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.717425 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6881954 73 - 22422827 CAGCUUGAAUUAGUGUCGCAUG--CCCAAUGAUAGCGCCUCAAGGCGCUUUCAAUUUAAGCAAUUACGCAACUGU--------- ..(((((((((.(.....)...--......((.((((((....)))))).)))))))))))..............--------- ( -21.20, z-score = -1.99, R) >droSim1.chrX 5404270 73 - 17042790 CAGCUCGAAUUAGUGUCGCAUG--CCCAAUGAUAGCGCCUCAAGGCGAUUUCAAUUUAAGCAAUUACGCAACUGU--------- ..(((..((((...(((.(((.--....))).....(((....))))))...))))..)))..............--------- ( -14.40, z-score = 0.17, R) >droSec1.super_24 109379 73 - 912625 CAGCUCGAAUUAGUGUCGGAUG--CCCAAUGAUAGCGCCUCAAGGCGAUUUCAAUUUAAGCAAUUACGCAACUGU--------- ..(((..((((......((...--.))...((...((((....))))...))))))..)))..............--------- ( -16.30, z-score = -0.43, R) >droEre2.scaffold_4690 15803824 73 - 18748788 CAGCUCAAAUUAGUGUCGCAUG--CCCAAUGAUAGCGCCUCAAGGCGCUUUCAAUUUAAGCAAUUACGCAACUGU--------- ............((((....((--(....(((.((((((....)))))).)))......)))...))))......--------- ( -18.90, z-score = -1.65, R) >droYak2.chrX 7302025 73 + 21770863 CAGCUUGAAUUAGUGUCGCAUG--CCCAAUGAUAGCGCCUCAAGGCGCUUUCAAUUUAAGCAAUUACGCAACUGU--------- ..(((((((((.(.....)...--......((.((((((....)))))).)))))))))))..............--------- ( -21.20, z-score = -1.99, R) >droAna3.scaffold_13417 359346 74 - 6960332 CAGCUCGAAUUAGUGUCGCAUG-CCCCAAUGAUAGCGCCUCAAGGCGCUUUCAAUUUAGACAAUUACGCAACUGU--------- (((..((......(((((....-).....(((.((((((....)))))).))).....))))....))...))).--------- ( -18.00, z-score = -1.19, R) >dp4.chrXL_group1e 6766069 62 - 12523060 -----------CAUGCCGCAUG--CCCAAUGAUAGCGCCUCAAGGCGCUUUCAAUUUAUACAAUUACGCAACAGU--------- -----------..(((.(....--)....(((.((((((....)))))).)))..............))).....--------- ( -14.80, z-score = -1.62, R) >droPer1.super_25 101803 62 - 1448063 -----------CAUGCCGCAUG--CCCAAUGAUAGCGCCUCAAGGCGCUUUCAAUUUAUACAAUUACGCAACAGU--------- -----------..(((.(....--)....(((.((((((....)))))).)))..............))).....--------- ( -14.80, z-score = -1.62, R) >droWil1.scaffold_181096 4783030 84 - 12416693 CAUCUCAAAUUAGUGCCGCAUGUGGCAAAUGAUAGCGCCUCAAGGCGUUUUCAAUUGAGACAAUUACGCAAUCGCAAUAGUUUU ..((((((.....(((((....)))))..(((.((((((....)))))).))).)))))).......((....))......... ( -26.00, z-score = -3.23, R) >droVir3.scaffold_13042 5086226 66 + 5191987 ------AAAUUAGCGCCGC-AU--GACAAUGAUAGCGCCUCAAGGCGCUUUCAAUUUAGACAAUUACGCAACUGU--------- ------......(((....-..--.....(((.((((((....)))))).))).............)))......--------- ( -16.25, z-score = -1.49, R) >droMoj3.scaffold_6359 1235786 67 - 4525533 ------AAAUUAGCGCCUCAAU--GACAAUGAUAGCCCCUCAAGGCGCUUUCAAUUUAGGCAAUUACGCAACUGU--------- ------........((((.(((--.....(((.(((.((....)).))).)))))).))))..............--------- ( -13.50, z-score = -0.75, R) >droGri2.scaffold_14853 4201815 66 - 10151454 ------AAAUUAGCGCCGC-AU--GACAAUGAUAGCGCCUCAAGGCGUUUUCAAUUUAGACAAUUACGCAACUGU--------- ------......(((....-..--.....(((.((((((....)))))).))).............)))......--------- ( -13.85, z-score = -0.74, R) >consensus CAGCU_AAAUUAGUGCCGCAUG__CCCAAUGAUAGCGCCUCAAGGCGCUUUCAAUUUAAACAAUUACGCAACUGU_________ ............(((..............(((.((((((....)))))).))).............)))............... (-12.47 = -12.59 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:22:29 2011