| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,876,736 – 6,876,844 |
| Length | 108 |
| Max. P | 0.896593 |
| Location | 6,876,736 – 6,876,844 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 86.02 |
| Shannon entropy | 0.25271 |
| G+C content | 0.49265 |
| Mean single sequence MFE | -30.12 |
| Consensus MFE | -24.52 |
| Energy contribution | -25.56 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.896593 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6876736 108 - 22422827 CGCACACGCCGAAAGAUUUAGCAAAAAAUCGGAUCCGAUAUCACUUGGUUUUCGAAGCGAAACACGUUCUUAACGGGAUCCAUCCGUCGGCGUCCCGAGAAACCUAUG ((...(((((((..(((((......)))))((((((....((.(((.(....).))).))....(((.....))))))))).....)))))))..))........... ( -30.80, z-score = -1.71, R) >droYak2.chrX 7296737 108 + 21770863 CGCACACGCCGAAAGAUUUAGCAAACAAUCGGAUCCGAUAUCACUCGCUUUUCGACGCGAAACACGUUCUUAUCGAGAUCCAUCCAUCGGCGUCCCGAGAAACCCGUG ((...(((((((..((((........))))((((((((((.....((..(((((...)))))..))....))))).))))).....)))))))..))........... ( -30.80, z-score = -2.40, R) >droEre2.scaffold_4690 15798653 108 - 18748788 CGCACACGCCGAAUGAUUUAGAGAACAAUCGGAUCCUAUAUCACUCGGUAUUUGAUGCGAAACACGUUCUUAUCGGGAUCCAUCUGACGGCGUCCCGAGAAACCCAUG ((((((.(((((.((((.(((.((.(.....).))))).)))).)))))...)).))))......(((....(((((((((.......)).)))))))..)))..... ( -31.10, z-score = -1.80, R) >droSec1.super_24 104213 91 - 912625 CGCACACGCCGAAAGAUUUAGCAAAAAAUCGGAUCCGAUAUCACUUGGUUUUCGAAGCGAAACAUGUUCUUAUCGGGAUCCAUCCGUCGGC----------------- .......(((((..(((((......)))))((((((((((..((...(((((......)))))..))...)))).)))))).....)))))----------------- ( -26.60, z-score = -1.88, R) >droSim1.chrX 5399106 108 - 17042790 CGCACACGCCGAAAGAUUUAGCAAAAAAUCGGAUCCGAUAUCACUUGGUUUUCGUUGCGAAACACGUUCUUAUCGGGAUCCAUCCGUCGGCGUCCCGAGAAACCUAUG ((...(((((((..(((((......)))))((((((((((.....((..(((((...)))))..))....)))).)))))).....)))))))..))........... ( -31.30, z-score = -1.61, R) >consensus CGCACACGCCGAAAGAUUUAGCAAAAAAUCGGAUCCGAUAUCACUUGGUUUUCGAAGCGAAACACGUUCUUAUCGGGAUCCAUCCGUCGGCGUCCCGAGAAACCCAUG .....(((((((..(((((......)))))((((((((((.....((..(((((...)))))..))....))))).))))).....)))))))............... (-24.52 = -25.56 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:22:27 2011