| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,472,941 – 10,473,041 |
| Length | 100 |
| Max. P | 0.529796 |
| Location | 10,472,941 – 10,473,041 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 75.89 |
| Shannon entropy | 0.44997 |
| G+C content | 0.40570 |
| Mean single sequence MFE | -25.49 |
| Consensus MFE | -15.77 |
| Energy contribution | -16.00 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.529796 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10472941 100 + 23011544 -ACCGUACAUGCGUCUGUCAGAAUUCUGGCAAGAA-GAAAUGCGUAUGGGGG----UGCCUAUAUAUUGGACUGUUUGGAUGUGUAAUGGAUGGAAUAAUACGUAU -.((((.((((((((((((((....))))).....-.......(((((((..----..)))))))............))))))...))).))))............ ( -24.10, z-score = -0.50, R) >droAna3.scaffold_12916 14316957 106 + 16180835 UCGUGUACAUGCGUCUUUUCAGAUUUUUGCCAAAUGGCAUUGCGUAUGCGUGCCUCAUUCUAUAUAAAUUCAAACCUAUAUAUACGUGUAAUGAAACAAUACGUAU ..(((..(((((((.............((((....))))..)))))))..)))............................((((((((.........)))))))) ( -19.16, z-score = -0.13, R) >droEre2.scaffold_4929 11681727 95 - 26641161 -CGCGUACAUGCGUCUGUCAGAAUUCUGGCAAAGAUGAAAUGCGUAUGGG------UGCCUAUAUAUCGGGUUGUAUGGAUGUGUAAUG----GAAUAAUACGUAU -..........((((((((((....)))))..)))))..((((((((...------..((((((((((.(......).))))))))..)----)....)))))))) ( -26.10, z-score = -1.24, R) >droYak2.chr2L 6878848 100 + 22324452 -CGCGUACAUGCGUCUGUCAGAAUUCUGGCAAGAA-GAAUUGCGUAUGGGUGCCUAUAUCUAUAUACCGGGGUGUAUGGAUGUGUAAUG----GAAUAAUACGUAU -((((....))))((((((((....))))).))).-....(((((((.....(((((((((((((((....)))))))))))))....)----)....))))))). ( -33.40, z-score = -2.81, R) >droSec1.super_3 5900831 98 + 7220098 -ACCGUACAUGCGUCUGUCAGAAUUCUGGCAAGAA-GAAAUGCGUAUGGG------UGCCUAUAUAUUGUGGUGUUUGGAUGUGUAAUGGAUGGAAUAAUACGUAU -.((((.((((((((((((((....))))).....-.((((((((((((.------...))))))......))))))))))))...))).))))............ ( -22.90, z-score = -0.19, R) >droSim1.chr2L 10276049 101 + 22036055 -ACCGUACAUGCGUCUGUCAGAAUUCUGGCAAGAA-AAAAUGCGUAUGGGUGC---CUCCUAUAUAUUGGUCUGUUUGGAUGUGUAAUGGAUGGAAUAAUACGUAU -..(((....)))((((((((....))))).))).-...((((((((.....(---((((((((((((.(......).))))))))..))).))....)))))))) ( -27.30, z-score = -1.61, R) >consensus _ACCGUACAUGCGUCUGUCAGAAUUCUGGCAAGAA_GAAAUGCGUAUGGGUG____UGCCUAUAUAUUGGGCUGUUUGGAUGUGUAAUGGAUGGAAUAAUACGUAU ...(((((((((((.((((((....))))))..........)))))))............((((((((.(......).)))))))).............))))... (-15.77 = -16.00 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:30:15 2011