| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,874,902 – 6,874,967 |
| Length | 65 |
| Max. P | 0.911065 |
| Location | 6,874,902 – 6,874,967 |
|---|---|
| Length | 65 |
| Sequences | 5 |
| Columns | 65 |
| Reading direction | reverse |
| Mean pairwise identity | 91.23 |
| Shannon entropy | 0.15476 |
| G+C content | 0.46601 |
| Mean single sequence MFE | -18.66 |
| Consensus MFE | -16.66 |
| Energy contribution | -17.30 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.22 |
| SVM RNA-class probability | 0.911065 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6874902 65 - 22422827 UGUCAGCCCCGAGGCAUCAUUUUGAUUAAAGCCCCUUGGAGCCAAUUGGAAUUGAUCGACAGUCG ((((.(((....)))........((((((..((..(((....)))..))..)))))))))).... ( -17.90, z-score = -1.80, R) >droYak2.chrX 7294895 65 + 21770863 UGUCAGCCGCGAGGCAUCAUUUUGAUUAAAGCUUAUUGGAGCCAAUUGGAAUUGAUCGACAGUCG ((((.(((....)))........((((((..((.((((....)))).))..)))))))))).... ( -21.60, z-score = -3.02, R) >droEre2.scaffold_4690 15796998 64 - 18748788 -GUCAGCCUCGGGGCAUCAUUUUGAUUAAAGCCCAUUUGAGUCAAUUGGUAUUGAUCGACAGUCG -(((.(((....)))........((((((.(((.(((......))).))).)))))))))..... ( -16.60, z-score = -1.52, R) >droSec1.super_24 102381 65 - 912625 UGUCAGCCUCGAGGCAUGAUUUUGAUUAAAGCCUAUUGGAGCCAAUUGGAUCUGAUCGACAGUCG ((((.(((....)))........(((((...((.((((....)))).))...))))))))).... ( -18.60, z-score = -1.54, R) >droSim1.chrX 5397274 65 - 17042790 UGUCAGCCUCGAGGCAUCAUUUUGAUUAAAGCCCAUUGGAGCCAAUUGGAUCUGAUCGACAGUCG ((((.(((....)))........(((((...((.((((....)))).))...))))))))).... ( -18.60, z-score = -1.60, R) >consensus UGUCAGCCUCGAGGCAUCAUUUUGAUUAAAGCCCAUUGGAGCCAAUUGGAAUUGAUCGACAGUCG .(((.(((....)))........((((((..((.((((....)))).))..)))))))))..... (-16.66 = -17.30 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:22:26 2011